RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 KIF6Q6ZMV9 814 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 ZNF34Q8IZ26 560 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
SMC4-213ENST00000472282 RBM46Q8TBY0 533 aaKnown RBP11.84□□□□□ -0.51
SMC4-213ENST00000472282 CFAP44Q96MT7 982 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 ADAM33Q9BZ11 813 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 TAOK3Q9H2K8 898 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 BABAM1Q9NWV8 329 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 CACNA1FO60840 1977 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 COL4A5P29400 1685 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 LTBP3Q9NS15 1303 aa11.84□□□□□ -0.51
SMC4-213ENST00000472282 GNAI1P63096 354 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 HTRA3P83110 453 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 GIGYF2Q6Y7W6 1299 aaKnown RBP11.83□□□□□ -0.52
SMC4-213ENST00000472282 MBIPQ9NS73 344 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 IFT57Q9NWB7 429 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 RIC1Q4ADV7 1423 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 SCN4AP35499 1836 aa11.83□□□□□ -0.52
SMC4-213ENST00000472282 IBTKQ9P2D0 1353 aaPredicted RBP11.82□□□□□ -0.52
SMC4-213ENST00000472282 BHMG1C9JSJ3 638 aaPredicted RBP11.82□□□□□ -0.52
SMC4-213ENST00000472282 NTSR2O95665 410 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 ZNF853P0CG23 659 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 GTF2E1P29083 439 aaPredicted RBP11.82□□□□□ -0.52
SMC4-213ENST00000472282 PTPN5P54829 565 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 CRY2Q49AN0 593 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 C16orf71Q8IYS4 520 aaPredicted RBP11.82□□□□□ -0.52
SMC4-213ENST00000472282 FBXW7Q969H0 707 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 EMILIN3Q9NT22 766 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 IL16Q14005 1332 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 ZNF521Q96K83 1311 aa11.82□□□□□ -0.52
SMC4-213ENST00000472282 COL4A1P02462 1669 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 AIMP1Q12904 312 aaKnown RBP11.81□□□□□ -0.52
SMC4-213ENST00000472282 CCDC93Q567U6 631 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 COPS6Q7L5N1 327 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 WDR63Q8IWG1 891 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 XAGE3Q8WTP9 111 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 TSR2Q969E8 191 aaKnown RBP11.81□□□□□ -0.52
SMC4-213ENST00000472282 ZNF428Q96B54 188 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 NYXQ9GZU5 481 aa11.81□□□□□ -0.52
SMC4-213ENST00000472282 DDNO94850 711 aaPredicted RBP11.8□□□□□ -0.52
SMC4-213ENST00000472282 VEGFAP15692 232 aaPredicted RBP11.8□□□□□ -0.52
SMC4-213ENST00000472282 APLP1P51693 650 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 HNRNPUQ00839 825 aaKnown RBP eCLIP11.8□□□□□ -0.522e-22■■■■■ 68.1
SMC4-213ENST00000472282 SYNE4Q8N205 404 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 DNAJC5GQ8N7S2 189 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 WNT2BQ93097 391 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 ZNF277Q9NRM2 450 aaPredicted RBP11.8□□□□□ -0.52
SMC4-213ENST00000472282 CHPF2Q9P2E5 772 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 LTBP1Q14766 1721 aa11.8□□□□□ -0.52
SMC4-213ENST00000472282 ADAMTSL1Q8N6G6 1762 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 PPP1R3GB7ZBB8 358 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 FKBP4Q02790 459 aaKnown RBP eCLIP11.79□□□□□ -0.52
SMC4-213ENST00000472282 FSTL1Q12841 308 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 SOGA3Q5TF21 947 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 DDX21Q9NR30 783 aaKnown RBP eCLIP11.79□□□□□ -0.521e-26■■■■■ 198.7
SMC4-213ENST00000472282 ZNF541Q9H0D2 1346 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 FANCIQ9NVI1 1328 aa11.79□□□□□ -0.52
SMC4-213ENST00000472282 LRRC37AA6NMS7 1700 aa11.78□□□□□ -0.52
SMC4-213ENST00000472282 ALDH1B1P30837 517 aa11.78□□□□□ -0.52
SMC4-213ENST00000472282 HOXA10P31260 410 aaPredicted RBP11.78□□□□□ -0.52
SMC4-213ENST00000472282 THSD4Q6ZMP0 1018 aa11.78□□□□□ -0.52
SMC4-213ENST00000472282 SMC1BQ8NDV3 1235 aa11.78□□□□□ -0.52
SMC4-213ENST00000472282 PCDHGA10Q9Y5H3 936 aa11.78□□□□□ -0.52
SMC4-213ENST00000472282 TCERG1O14776 1098 aaKnown RBP11.77□□□□□ -0.53
SMC4-213ENST00000472282 PARP10Q53GL7 1025 aa11.77□□□□□ -0.53
SMC4-213ENST00000472282 HDGFL1Q5TGJ6 251 aa11.77□□□□□ -0.53
SMC4-213ENST00000472282 DUSP27Q5VZP5 1158 aa11.77□□□□□ -0.53
SMC4-213ENST00000472282 PPP1R42Q7Z4L9 355 aa11.77□□□□□ -0.53
SMC4-213ENST00000472282 NLRP10Q86W26 655 aa11.77□□□□□ -0.53
SMC4-213ENST00000472282 RPGRQ92834 1020 aaKnown RBP11.77□□□□□ -0.53
SMC4-213ENST00000472282 IRX2Q9BZI1 471 aaPredicted RBP11.77□□□□□ -0.53
SMC4-213ENST00000472282 ELL2O00472 640 aaPredicted RBP11.76□□□□□ -0.53
SMC4-213ENST00000472282 IARSP41252 1262 aaKnown RBP11.76□□□□□ -0.53
SMC4-213ENST00000472282 TCIRG1Q13488 830 aa11.76□□□□□ -0.53
SMC4-213ENST00000472282 SLC10A5Q5PT55 438 aa11.76□□□□□ -0.53
SMC4-213ENST00000472282 RTKN2Q8IZC4 609 aa11.76□□□□□ -0.53
SMC4-213ENST00000472282 C8orf58Q8NAV2 365 aa11.76□□□□□ -0.53
SMC4-213ENST00000472282 BBXQ8WY36 941 aaPredicted RBP11.76□□□□□ -0.53
SMC4-213ENST00000472282 UTP14AQ9BVJ6 771 aaKnown RBP11.76□□□□□ -0.53
SMC4-213ENST00000472282 MYH16Q9H6N6 1097 aa11.76□□□□□ -0.53
SMC4-213ENST00000472282 DUOX1Q9NRD9 1551 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 SPEF2Q9C093 1822 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 PPEF1O14829 653 aaPredicted RBP11.75□□□□□ -0.53
SMC4-213ENST00000472282 HOXB7P09629 217 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 HCLS1P14317 486 aaPredicted RBP11.75□□□□□ -0.53
SMC4-213ENST00000472282 CDCA7LQ96GN5 454 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 CRAMP1Q96RY5 1269 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 ABCC4O15439 1325 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 CEP350Q5VT06 3117 aa11.75□□□□□ -0.53
SMC4-213ENST00000472282 E9PSI1 815 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 ATP5J2-PTCD1G3V325 749 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 FZD9O00144 591 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 EXOSC9Q06265 439 aaKnown RBP11.74□□□□□ -0.53
SMC4-213ENST00000472282 SLFN5Q08AF3 891 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 CAMK2BQ13554 666 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 HSP90AB3PQ58FF7 597 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 TSPYL6Q8N831 410 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 PLBD2Q8NHP8 589 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 RBM17Q96I25 401 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms