RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 MAN1A1P33908 653 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 MRE11P49959 708 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 EVA1CP58658 441 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 PTK7Q13308 1070 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 PPP2R5AQ15172 486 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 PDCD2Q16342 344 aaPredicted RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 MAP7D1Q3KQU3 841 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 WWC2Q6AWC2 1192 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 LARP1Q6PKG0 1096 aaKnown RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 TAX1BP1Q86VP1 789 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 FMNL3Q8IVF7 1028 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 LMNTD2Q8IXW0 634 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 CCDC191Q8NCU4 936 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 SYAP1Q96A49 352 aaPredicted RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 ZNF594Q96JF6 807 aaPredicted RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 CDC5LQ99459 802 aaKnown RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 RASSF4Q9H2L5 321 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 CWC15Q9P013 229 aaKnown RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 RSPH14Q9UHP6 348 aa6.08□□□□□ -1.44
COL3A1-205ENST00000470167 IQSEC3Q9UPP2 1182 aaPredicted RBP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.08□□□□□ -1.44
COL3A1-205ENST00000470167 ERICH4A6NGS2 130 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 TRIM64CA6NLI5 447 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 SLC27A2O14975 620 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 ZBTB24O43167 697 aaPredicted RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 TRIM37O94972 964 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 FOSL1P15407 271 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 VCAM1P19320 739 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 HOXD10P28358 340 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 CLDN10P78369 228 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 TRIM32Q13049 653 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 TAF7Q15545 349 aaPredicted RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 CCDC92Q53HC0 331 aaPredicted RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 EFCAB2Q5VUJ9 269 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 KCNV1Q6PIU1 500 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 KRT77Q7Z794 578 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 UBE2Q1Q7Z7E8 422 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 HSCBQ8IWL3 235 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 CCAR1Q8IX12 1150 aaKnown RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 DRC7Q8IY82 874 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 EFCAB13Q8IY85 973 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 MYOCDQ8IZQ8 938 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 GOLGA6L1Q8N7Z2 621 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 MRRFQ96E11 262 aaKnown RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 MUC3BQ9H195 1237 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 IRAK4Q9NWZ3 460 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 TMOD4Q9NZQ9 345 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 HCSTQ9UBK5 93 aa6.07□□□□□ -1.44
COL3A1-205ENST00000470167 MORC2Q9Y6X9 1032 aaPredicted RBP6.07□□□□□ -1.44
COL3A1-205ENST00000470167 DHX29Q7Z478 1369 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SHTN1A0MZ66 631 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 TMCO5BA8MYB1 307 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 GOLGA6L6A8MZA4 724 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 GOLGA6L22H0YM25 854 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 LZTS3O60299 673 aaPredicted RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SLFN14P0C7P3 912 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 GTF2F1P35269 517 aaKnown RBP eCLIP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 CLK1P49759 484 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 RWDD2BP57060 319 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 RAB15P59190 212 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 IGBP1P78318 339 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 RBM6P78332 1123 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SKOR1P84550 965 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 CHAF1AQ13111 956 aaPredicted RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 PDIA5Q14554 519 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SLC5A9Q2M3M2 681 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 HS1BP3Q53T59 392 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 MCTP2Q6DN12 878 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 CCDC174Q6PII3 467 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SASS6Q6UVJ0 657 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SUGP1Q8IWZ8 645 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 TRMT44Q8IYL2 757 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 MYO1HQ8N1T3 1032 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 ANKLE1Q8NAG6 615 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 HDAC7Q8WUI4 952 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 SMARCC1Q92922 1105 aaPredicted RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 LRRC27Q9C0I9 530 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 ACAD8Q9UKU7 415 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 RABL2BQ9UNT1 228 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 KIAA1024Q9UPX6 916 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 NOD1Q9Y239 953 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 PCDHB11Q9Y5F2 797 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 IVNS1ABPQ9Y6Y0 642 aa6.06□□□□□ -1.44
COL3A1-205ENST00000470167 BAZ1BQ9UIG0 1483 aaKnown RBP6.06□□□□□ -1.44
COL3A1-205ENST00000470167 TMEM110-MUSTN1A8MSY1 372 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 BBOX1O75936 387 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 CDKL5O76039 1030 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 MYBL2P10244 700 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 ATP2B1P20020 1258 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 HOXA10P31260 410 aaPredicted RBP6.05□□□□□ -1.44
COL3A1-205ENST00000470167 GTF2IP78347 998 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 DPYDQ12882 1025 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 CCDC178Q5BJE1 867 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 SND1Q7KZF4 910 aaKnown RBP eCLIP6.05□□□□□ -1.44
COL3A1-205ENST00000470167 TRIM50Q86XT4 487 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 ANKMY2Q8IV38 441 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 SVIPQ8NHG7 77 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 FAM200AQ8TCP9 573 aa6.05□□□□□ -1.44
COL3A1-205ENST00000470167 NEK9Q8TD19 979 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms