RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 NBPF5PQ86XG9 351 aaPredicted RBP7.44□□□□□ -1.22
USP39-213ENST00000467885 SMC5Q8IY18 1101 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 CCDC136Q96JN2 1154 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 NYXQ9GZU5 481 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 NOP58Q9Y2X3 529 aaKnown RBP7.44□□□□□ -1.22
USP39-213ENST00000467885 KDM2BQ8NHM5 1336 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 SH3TC1Q8TE82 1336 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 MMP10P09238 476 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 MSL1Q68DK7 614 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 ZNF710Q8N1W2 664 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 NLRP3Q96P20 1036 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 COPRSQ9NQ92 184 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 PXDNLA1KZ92 1463 aa7.43□□□□□ -1.22
USP39-213ENST00000467885 CACNA1FO60840 1977 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 COL5A3P25940 1745 aaPredicted RBP7.42□□□□□ -1.22
USP39-213ENST00000467885 TNS1Q9HBL0 1735 aaKnown RBP7.42□□□□□ -1.22
USP39-213ENST00000467885 SRGAP3O43295 1099 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 GTF2E1P29083 439 aaPredicted RBP7.42□□□□□ -1.22
USP39-213ENST00000467885 ATG9AQ7Z3C6 839 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 KLHDC4Q8TBB5 520 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 BRIP1Q9BX63 1249 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 GREM2Q9H772 168 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 SEC31BQ9NQW1 1179 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 PA2G4Q9UQ80 394 aaKnown RBP7.42□□□□□ -1.22
USP39-213ENST00000467885 RIPOR2Q9Y4F9 1068 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 PARP3Q9Y6F1 533 aa7.42□□□□□ -1.22
USP39-213ENST00000467885 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.42□□□□□ -1.22
USP39-213ENST00000467885 PSDA5PKW4 1024 aaPredicted RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 SURF6O75683 361 aaKnown RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 SASH1O94885 1247 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 ZBTB7AO95365 584 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 HSP90B1P14625 803 aaKnown RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 HOXA10P31260 410 aaPredicted RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 CTSWP56202 376 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 DOK7Q18PE1 504 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 C16orf71Q8IYS4 520 aaPredicted RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 EFCAB3Q8N7B9 438 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 ZNF594Q96JF6 807 aaPredicted RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 CCDC85AQ96PX6 553 aaPredicted RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 PUS3Q9BZE2 481 aaKnown RBP7.41□□□□□ -1.22
USP39-213ENST00000467885 LAMB4A4D0S4 1761 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 TAF1LQ8IZX4 1826 aa7.41□□□□□ -1.22
USP39-213ENST00000467885 HMMRO75330 724 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 KCNA3P22001 575 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 ITGA6P23229 1130 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 PTGER2P43116 358 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 RPS8P62241 208 aaKnown RBP7.4□□□□□ -1.22
USP39-213ENST00000467885 NUCB1Q02818 461 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 IFIT5Q13325 482 aaKnown RBP7.4□□□□□ -1.22
USP39-213ENST00000467885 CCDC57Q2TAC2 916 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 CRY2Q49AN0 593 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 LRRC24Q50LG9 513 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 ANKRD45Q5TZF3 282 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 CENPQQ7L2Z9 268 aaPredicted RBP7.4□□□□□ -1.22
USP39-213ENST00000467885 CNBD1Q8NA66 436 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 GCC1Q96CN9 775 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 MTFR1LQ9H019 292 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 PDZRN3Q9UPQ7 1066 aa7.4□□□□□ -1.22
USP39-213ENST00000467885 CARMIL3Q8ND23 1372 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 ANKRD18BA2A2Z9 1011 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 EYA2O00167 538 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 SOCS7O14512 581 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 RAB11FIP3O75154 756 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 SRGNP10124 158 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 G3BP1Q13283 466 aaKnown RBP eCLIP7.39□□□□□ -1.23
USP39-213ENST00000467885 CCDC152Q4G0S7 254 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 LDHAL6AQ6ZMR3 332 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 CRAMP1Q96RY5 1269 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 EXOC6BQ9Y2D4 811 aa7.39□□□□□ -1.23
USP39-213ENST00000467885 RTL9Q8NET4 1388 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 ABCC12Q96J65 1359 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 WTIPA6NIX2 430 aaPredicted RBP7.38□□□□□ -1.23
USP39-213ENST00000467885 SMARCA5O60264 1052 aaPredicted RBP7.38□□□□□ -1.23
USP39-213ENST00000467885 BBOX1O75936 387 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 CIAO1O76071 339 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 PDE4AP27815 886 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 PDE6BP35913 854 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 FAM161AQ3B820 660 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 CHD1LQ86WJ1 897 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 SKAP1Q86WV1 359 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 RHPN1Q8TCX5 695 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 CELF1Q92879 486 aaKnown RBP7.38□□□□□ -1.23
USP39-213ENST00000467885 BSDC1Q9NW68 430 aaPredicted RBP7.38□□□□□ -1.23
USP39-213ENST00000467885 MINPP1Q9UNW1 487 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 UBR3Q6ZT12 1888 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 RGPD3A6NKT7 1758 aaPredicted RBP7.38□□□□□ -1.23
USP39-213ENST00000467885 RGPD4Q7Z3J3 1758 aa7.38□□□□□ -1.23
USP39-213ENST00000467885 NUP98P52948 1817 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 IL15P40933 162 aaPredicted RBP7.37□□□□□ -1.23
USP39-213ENST00000467885 TIMM10P62072 90 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 ST5P78524 1137 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 TFCP2Q12800 502 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 HSP90AB4PQ58FF6 505 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 TMEM92Q6UXU6 159 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 DDX46Q7L014 1031 aaKnown RBP7.37□□□□□ -1.23
USP39-213ENST00000467885 C7orf43Q8WVR3 580 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 EAF2Q96CJ1 260 aaPredicted RBP7.37□□□□□ -1.23
USP39-213ENST00000467885 SIL1Q9H173 461 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 CHMP3Q9Y3E7 222 aa7.37□□□□□ -1.23
USP39-213ENST00000467885 NUP188Q5SRE5 1749 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms