RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 IFIT1P09914 478 aaKnown RBP21.98■■□□□ 1.11
COL9A3-205ENST00000466192 PRPF40BQ6NWY9 871 aaKnown RBP21.98■■□□□ 1.11
COL9A3-205ENST00000466192 KCNB2Q92953 911 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 TRPC5Q9UL62 973 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-205ENST00000466192 ZNF652Q9Y2D9 606 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 SCN7AQ01118 1682 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 CASZ1Q86V15 1759 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 DDX11L8A8MPP1 907 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 SMIM5Q71RC9 77 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 GBP4Q96PP9 640 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 ANO8Q9HCE9 1232 aaPredicted RBP21.97■■□□□ 1.11
COL9A3-205ENST00000466192 RBM8AQ9Y5S9 174 aaKnown RBP21.97■■□□□ 1.11
COL9A3-205ENST00000466192 CLEC4GQ6UXB4 293 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 VGLL2Q8N8G2 317 aa21.97■■□□□ 1.11
COL9A3-205ENST00000466192 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.97■■□□□ 1.11
COL9A3-205ENST00000466192 CWC22Q9HCG8 908 aaKnown RBP21.96■■□□□ 1.11
COL9A3-205ENST00000466192 EP400Q96L91 3159 aa21.95■■□□□ 1.11
COL9A3-205ENST00000466192 ATP2B3Q16720 1220 aa21.95■■□□□ 1.1
COL9A3-205ENST00000466192 CCDC158Q5M9N0 1113 aa21.95■■□□□ 1.1
COL9A3-205ENST00000466192 RC3H1Q5TC82 1133 aaKnown RBP21.95■■□□□ 1.1
COL9A3-205ENST00000466192 SEPT12Q8IYM1 358 aa21.95■■□□□ 1.1
COL9A3-205ENST00000466192 AKAP11Q9UKA4 1901 aa21.95■■□□□ 1.1
COL9A3-205ENST00000466192 GORABQ5T7V8 394 aa21.95■■□□□ 1.1
COL9A3-205ENST00000466192 SEC62Q99442 399 aaKnown RBP21.95■■□□□ 1.1
COL9A3-205ENST00000466192 TAF5LO75529 589 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 PKP1Q13835 747 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 TTC39AQ5SRH9 613 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 CREB3L3Q68CJ9 461 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 CCNL1Q9UK58 526 aaPredicted RBP21.94■■□□□ 1.1
COL9A3-205ENST00000466192 TRAK2O60296 914 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 ADCK5Q3MIX3 580 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 TTC14Q96N46 770 aa21.94■■□□□ 1.1
COL9A3-205ENST00000466192 KCNJ4P48050 445 aa21.93■■□□□ 1.1
COL9A3-205ENST00000466192 NUCB2P80303 420 aa21.93■■□□□ 1.1
COL9A3-205ENST00000466192 IL27Q8NEV9 243 aa21.93■■□□□ 1.1
COL9A3-205ENST00000466192 SEC31BQ9NQW1 1179 aa21.93■■□□□ 1.1
COL9A3-205ENST00000466192 MYH7P12883 1935 aa21.93■■□□□ 1.1
COL9A3-205ENST00000466192 RPS6KA4O75676 772 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 PDE8BO95263 885 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 SLFNL1Q499Z3 407 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 MCMDC2Q4G0Z9 681 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 CCDC129Q6ZRS4 1044 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 BCL2L12Q9HB09 334 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 ARAP2Q8WZ64 1704 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 CASTP20810 708 aaKnown RBP21.92■■□□□ 1.1
COL9A3-205ENST00000466192 CUL4AQ13619 759 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 SCARF1Q14162 830 aa21.92■■□□□ 1.1
COL9A3-205ENST00000466192 SLC27A2O14975 620 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 CPA1P15085 419 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 FKBP4Q02790 459 aaKnown RBP eCLIP21.91■■□□□ 1.1
COL9A3-205ENST00000466192 JAKMIP1Q96N16 626 aaKnown RBP21.91■■□□□ 1.1
COL9A3-205ENST00000466192 GNPATO15228 680 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 ZKSCAN1P17029 563 aaPredicted RBP21.91■■□□□ 1.1
COL9A3-205ENST00000466192 CCDC152Q4G0S7 254 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 TICAM2Q86XR7 235 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 TM6SF1Q9BZW5 370 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 QTRT2Q9H974 415 aaKnown RBP21.91■■□□□ 1.1
COL9A3-205ENST00000466192 BRWD3Q6RI45 1802 aa21.91■■□□□ 1.1
COL9A3-205ENST00000466192 TAF1P21675 1872 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 CYP2E1P05181 493 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-205ENST00000466192 HSP90B1P14625 803 aaKnown RBP21.9■■□□□ 1.1
COL9A3-205ENST00000466192 AMIGO3Q86WK7 504 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 NARFQ9UHQ1 456 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 RTL9Q8NET4 1388 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 ABCC12Q96J65 1359 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 MROH5Q6ZUA9 1318 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 MYO5AQ9Y4I1 1855 aaKnown RBP21.9■■□□□ 1.1
COL9A3-205ENST00000466192 COL4A1P02462 1669 aa21.9■■□□□ 1.1
COL9A3-205ENST00000466192 RGL2O15211 777 aa21.89■■□□□ 1.1
COL9A3-205ENST00000466192 USPL1Q5W0Q7 1092 aa21.89■■□□□ 1.1
COL9A3-205ENST00000466192 TBC1D9BQ66K14 1250 aa21.89■■□□□ 1.1
COL9A3-205ENST00000466192 HELBQ8NG08 1087 aaPredicted RBP21.89■■□□□ 1.1
COL9A3-205ENST00000466192 GZF1Q9H116 711 aaPredicted RBP21.89■■□□□ 1.1
COL9A3-205ENST00000466192 ZSWIM6Q9HCJ5 1215 aa21.89■■□□□ 1.1
COL9A3-205ENST00000466192 SRP68Q9UHB9 627 aaKnown RBP21.89■■□□□ 1.1
COL9A3-205ENST00000466192 C4BP0C0L5 1744 aa21.89■■□□□ 1.1
COL9A3-205ENST00000466192 AK2P54819 239 aa21.89■■□□□ 1.09
COL9A3-205ENST00000466192 ERFEQ4G0M1 354 aa21.89■■□□□ 1.09
COL9A3-205ENST00000466192 ZMYM1Q5SVZ6 1142 aa21.89■■□□□ 1.09
COL9A3-205ENST00000466192 BICDL1Q6ZP65 573 aa21.89■■□□□ 1.09
COL9A3-205ENST00000466192 C4AP0C0L4 1744 aa21.89■■□□□ 1.09
COL9A3-205ENST00000466192 PI16Q6UXB8 463 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 HELLSQ9NRZ9 838 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 TAF6LQ9Y6J9 622 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 COL24A1Q17RW2 1714 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 RPAP1Q9BWH6 1393 aaPredicted RBP21.88■■□□□ 1.09
COL9A3-205ENST00000466192 BAG4O95429 457 aaKnown RBP21.88■■□□□ 1.09
COL9A3-205ENST00000466192 ZAP70P43403 619 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 MPHOSPH8Q99549 860 aa21.88■■□□□ 1.09
COL9A3-205ENST00000466192 RNF113AO15541 343 aaKnown RBP21.87■■□□□ 1.09
COL9A3-205ENST00000466192 FGFR2P21802 821 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 RNF20Q5VTR2 975 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 CLEC17AQ6ZS10 378 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 RTCBQ9Y3I0 505 aaKnown RBP21.87■■□□□ 1.09
COL9A3-205ENST00000466192 MCAMP43121 646 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 PUM3Q15397 648 aaKnown RBP21.87■■□□□ 1.09
COL9A3-205ENST00000466192 RUFY3Q7L099 469 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 INTS4Q96HW7 963 aaKnown RBP21.87■■□□□ 1.09
COL9A3-205ENST00000466192 CYP46A1Q9Y6A2 500 aa21.87■■□□□ 1.09
COL9A3-205ENST00000466192 COL9A3Q14050 684 aaPredicted RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms