RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CXXC1Q9P0U4 656 aaPredicted RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 ZBTB1Q9Y2K1 713 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 COL4A5P29400 1685 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 TTC28Q96AY4 2481 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 A0A1W2PP64 1363 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 CACNA1GO43497 2377 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 CYP19A1P11511 503 aaPredicted RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 GTF2E1P29083 439 aaPredicted RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 LACTBP83111 547 aaPredicted RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 GRIN2CQ14957 1233 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 TPTE2Q6XPS3 522 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 HDGFL2Q7Z4V5 671 aaPredicted RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 ANKLE1Q8NAG6 615 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 HELBQ8NG08 1087 aaPredicted RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 RPGRQ92834 1020 aaKnown RBP3.76□□□□□ -1.81
USP40-211ENST00000464956 DEFB118Q96PH6 123 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 NBPF3Q9H094 633 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 UNC93B1Q9H1C4 597 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 SRRDQ9UH36 339 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 SNED1Q8TER0 1413 aa3.76□□□□□ -1.81
USP40-211ENST00000464956 LAMA3Q16787 3333 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 SLX4Q8IY92 1834 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 ALADP13716 330 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 PTPN5P54829 565 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 KIAA2012Q0VF49 1180 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 PRKG1Q13976 671 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 SCARF1Q14162 830 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 PDE3AQ14432 1141 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 TAF1CQ15572 869 aaPredicted RBP3.75□□□□□ -1.81
USP40-211ENST00000464956 CCDC85BQ15834 202 aaPredicted RBP3.75□□□□□ -1.81
USP40-211ENST00000464956 ST3GAL2Q16842 350 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 SLAIN1Q8ND83 568 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 DIS3LQ8TF46 1054 aaKnown RBP3.75□□□□□ -1.81
USP40-211ENST00000464956 WNK4Q96J92 1243 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 ARHGAP39Q9C0H5 1083 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 C11orf49Q9H6J7 331 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.75□□□□□ -1.81
USP40-211ENST00000464956 ZNF330Q9Y3S2 320 aaPredicted RBP3.75□□□□□ -1.81
USP40-211ENST00000464956 SBNO2Q9Y2G9 1366 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 ZNF831Q5JPB2 1677 aa3.75□□□□□ -1.81
USP40-211ENST00000464956 ASTN2O75129 1339 aaPredicted RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 MED19A0JLT2 244 aaPredicted RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 PSMD14O00487 310 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 TCERG1O14776 1098 aaKnown RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 FMNL1O95466 1100 aaPredicted RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 IGFBP4P22692 258 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 KCNQ1P51787 676 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 RRS1Q15050 365 aaKnown RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 SKIV2LQ15477 1246 aaKnown RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 RIC1Q4ADV7 1423 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 LDLRAD1Q5T700 205 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 PRAMEF18Q5VWM3 479 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 ZBTB38Q8NAP3 1195 aaPredicted RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 NECTIN2Q92692 538 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 ZKSCAN4Q969J2 545 aaPredicted RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 PRRX2Q99811 253 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 CRISPLD2Q9H0B8 497 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 ZNF576Q9H609 170 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 PRKAG2Q9UGJ0 569 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 ANGEL1Q9UNK9 670 aaKnown RBP3.74□□□□□ -1.81
USP40-211ENST00000464956 TBC1D2BQ9UPU7 963 aa3.74□□□□□ -1.81
USP40-211ENST00000464956 MUC3AQ02505 3323 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 MYPNQ86TC9 1320 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 ADGRA2Q96PE1 1338 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 HTTP42858 3142 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 COL11A2P13942 1736 aaPredicted RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 EDC4Q6P2E9 1401 aaKnown RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 TESPA1A2RU30 521 aaPredicted RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 YDJCA8MPS7 323 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 TLR2O60603 784 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 STARD3NLO95772 234 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 FBLN1P23142 703 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 PSMC4P43686 418 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 TFF2Q03403 129 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 SHHQ15465 462 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 CRY2Q49AN0 593 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 HSP90AB2PQ58FF8 381 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 DPP8Q6V1X1 898 aaPredicted RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 DGLUCYQ7Z3D6 616 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 NFATC2IPQ8NCF5 419 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 KHSRPQ92945 711 aaKnown RBP eCLIP3.73□□□□□ -1.81
USP40-211ENST00000464956 RBM17Q96I25 401 aaKnown RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 MFSD14AQ96MC6 490 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 MPHOSPH9Q99550 1183 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 PTPN18Q99952 460 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 RTFDC1Q9BY42 306 aaPredicted RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 PAK6Q9NQU5 681 aaPredicted RBP3.73□□□□□ -1.81
USP40-211ENST00000464956 ZNF652Q9Y2D9 606 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 MUC6Q6W4X9 2439 aa3.73□□□□□ -1.81
USP40-211ENST00000464956 BRCA2P51587 3418 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 NCAPD2Q15021 1401 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 ST20-MTHFSA0A0A6YYL1 179 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 UNCXA6NJT0 531 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 CAMTA2O94983 1202 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 INHAP05111 366 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 OSBPP22059 807 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 DNAJB2P25686 324 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 HOXA10P31260 410 aaPredicted RBP3.72□□□□□ -1.81
USP40-211ENST00000464956 MTHFSP49914 203 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 NBPF10Q6P3W6 841 aaKnown RBP3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms