RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 TMX4Q9H1E5 349 aaPredicted RBP11.34□□□□□ -0.59
HDAC9-220ENST00000461409 PCNTO95613 3336 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 NUP98P52948 1817 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 CHL1O00533 1208 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 HOXB7P09629 217 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 CAMK2BQ13554 666 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 NEUROD2Q15784 382 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 PROSER3Q2NL68 480 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 POTEEQ6S8J3 1075 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 LDHDQ86WU2 507 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 SYNE4Q8N205 404 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 NLRP3Q96P20 1036 aa11.33□□□□□ -0.6
HDAC9-220ENST00000461409 FZD9O00144 591 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 PPEF1O14829 653 aaPredicted RBP11.32□□□□□ -0.6
HDAC9-220ENST00000461409 LSM11P83369 360 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDAC9-220ENST00000461409 SLC10A5Q5PT55 438 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 COPS6Q7L5N1 327 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 GPC2Q8N158 579 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 XAGE3Q8WTP9 111 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 TAF1DQ9H5J8 278 aaPredicted RBP11.32□□□□□ -0.6
HDAC9-220ENST00000461409 DDX21Q9NR30 783 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDAC9-220ENST00000461409 HACL1Q9UJ83 578 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 LAS1LQ9Y4W2 734 aaKnown RBP11.32□□□□□ -0.6
HDAC9-220ENST00000461409 ZNF541Q9H0D2 1346 aa11.32□□□□□ -0.6
HDAC9-220ENST00000461409 ANXA1P04083 346 aa11.31□□□□□ -0.6
HDAC9-220ENST00000461409 PNMA8AQ86V59 439 aaPredicted RBP11.31□□□□□ -0.6
HDAC9-220ENST00000461409 NECTIN2Q92692 538 aa11.31□□□□□ -0.6
HDAC9-220ENST00000461409 ADAMTS8Q9UP79 889 aa11.31□□□□□ -0.6
HDAC9-220ENST00000461409 SNED1Q8TER0 1413 aa11.31□□□□□ -0.6
HDAC9-220ENST00000461409 SCN4AP35499 1836 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 PBX2P40425 430 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 EIF6P56537 245 aaKnown RBP11.3□□□□□ -0.6
HDAC9-220ENST00000461409 CALD1Q05682 793 aaKnown RBP11.3□□□□□ -0.6
HDAC9-220ENST00000461409 AIMP1Q12904 312 aaKnown RBP11.3□□□□□ -0.6
HDAC9-220ENST00000461409 TCIRG1Q13488 830 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 EAPPQ56P03 285 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-220ENST00000461409 HDGFL1Q5TGJ6 251 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 NLRP10Q86W26 655 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 LARGE2Q8N3Y3 721 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 PRKRIP1Q9H875 184 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-220ENST00000461409 ATP6V0A2Q9Y487 856 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 SH3TC1Q8TE82 1336 aa11.3□□□□□ -0.6
HDAC9-220ENST00000461409 BBOX1O75936 387 aa11.29□□□□□ -0.6
HDAC9-220ENST00000461409 EPHX2P34913 555 aa11.29□□□□□ -0.6
HDAC9-220ENST00000461409 SUPT20HQ8NEM7 779 aa11.29□□□□□ -0.6
HDAC9-220ENST00000461409 VPS33BQ9H267 617 aa11.29□□□□□ -0.6
HDAC9-220ENST00000461409 CHPF2Q9P2E5 772 aa11.29□□□□□ -0.6
HDAC9-220ENST00000461409 DBF4Q9UBU7 674 aaPredicted RBP11.29□□□□□ -0.6
HDAC9-220ENST00000461409 TRMT112Q9UI30 125 aaKnown RBP11.29□□□□□ -0.6
HDAC9-220ENST00000461409 TCERG1O14776 1098 aaKnown RBP11.28□□□□□ -0.6
HDAC9-220ENST00000461409 EVI5O60447 810 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 LMOD1P29536 600 aaPredicted RBP11.28□□□□□ -0.6
HDAC9-220ENST00000461409 KRT24Q2M2I5 525 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 DDX46Q7L014 1031 aaKnown RBP11.28□□□□□ -0.6
HDAC9-220ENST00000461409 NIM1KQ8IY84 436 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 PLBD2Q8NHP8 589 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 HYPKQ9NX55 129 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 ABCC4O15439 1325 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 PASKQ96RG2 1323 aa11.28□□□□□ -0.6
HDAC9-220ENST00000461409 PPIP5K2O43314 1243 aa11.27□□□□□ -0.61
HDAC9-220ENST00000461409 HCLS1P14317 486 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-220ENST00000461409 TMC4Q7Z404 712 aa11.27□□□□□ -0.61
HDAC9-220ENST00000461409 GJA3Q9Y6H8 435 aa11.27□□□□□ -0.61
HDAC9-220ENST00000461409 TMEM88BA6NKF7 163 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 MAP3K9P80192 1104 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 PPP4R3BQ5MIZ7 849 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 DUSP27Q5VZP5 1158 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 DPP8Q6V1X1 898 aaPredicted RBP11.26□□□□□ -0.61
HDAC9-220ENST00000461409 SP8Q8IXZ3 490 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 RTFDC1Q9BY42 306 aaPredicted RBP11.26□□□□□ -0.61
HDAC9-220ENST00000461409 CHMP4AQ9BY43 222 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 MBIPQ9NS73 344 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 IFT57Q9NWB7 429 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 ANKRD36CQ5JPF3 1778 aa11.26□□□□□ -0.61
HDAC9-220ENST00000461409 COL4A5P29400 1685 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 APAF1O14727 1248 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 ITGBL1O95965 494 aaPredicted RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 HSPA1AP0DMV8 641 aaKnown RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 HSPA1BP0DMV9 641 aaKnown RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 HSP90B1P14625 803 aaKnown RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 GNAI1P63096 354 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 GRAPQ13588 217 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 AOC3Q16853 763 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 CNTROBQ8N137 903 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 GRAPLQ8TC17 118 aaPredicted RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 MKRN1Q9UHC7 482 aaKnown RBP11.25□□□□□ -0.61
HDAC9-220ENST00000461409 ZNRF3Q9ULT6 936 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 CNTNAP1P78357 1384 aa11.25□□□□□ -0.61
HDAC9-220ENST00000461409 ZNF853P0CG23 659 aa11.24□□□□□ -0.61
HDAC9-220ENST00000461409 SCNN1DP51172 638 aa11.24□□□□□ -0.61
HDAC9-220ENST00000461409 FOSBP53539 338 aa11.24□□□□□ -0.61
HDAC9-220ENST00000461409 TRIM28Q13263 835 aaKnown RBP11.24□□□□□ -0.61
HDAC9-220ENST00000461409 MAP1SQ66K74 1059 aaPredicted RBP11.24□□□□□ -0.61
HDAC9-220ENST00000461409 USP50Q70EL3 339 aaPredicted RBP11.24□□□□□ -0.61
HDAC9-220ENST00000461409 MPNDQ8N594 471 aa11.24□□□□□ -0.61
HDAC9-220ENST00000461409 ISCA1Q9BUE6 129 aa11.24□□□□□ -0.61
HDAC9-220ENST00000461409 ADAMTSL1Q8N6G6 1762 aa11.23□□□□□ -0.61
HDAC9-220ENST00000461409 KIAA2012Q0VF49 1180 aa11.23□□□□□ -0.61
HDAC9-220ENST00000461409 COL13A1Q5TAT6 717 aaPredicted RBP11.23□□□□□ -0.61
HDAC9-220ENST00000461409 SLC51AQ86UW1 340 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms