RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 OSCARQ8IYS5 282 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 MRFAP1L1Q96HT8 127 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 UTP14AQ9BVJ6 771 aaKnown RBP10.53□□□□□ -0.72
COPB1-202ENST00000439561 CARD6Q9BX69 1037 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 TRIM34Q9BYJ4 488 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 ALKQ9UM73 1620 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 HOXC9P31274 260 aa10.52□□□□□ -0.72
COPB1-202ENST00000439561 GNG11P61952 73 aa10.52□□□□□ -0.72
COPB1-202ENST00000439561 C8orf76Q96K31 380 aa10.52□□□□□ -0.72
COPB1-202ENST00000439561 MORC2Q9Y6X9 1032 aaPredicted RBP10.52□□□□□ -0.72
COPB1-202ENST00000439561 U3KPZ7 1027 aaPredicted RBP10.52□□□□□ -0.72
COPB1-202ENST00000439561 MLH3Q9UHC1 1453 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 PRAMEF22A3QJZ6 481 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 ATP5J2-PTCD1G3V325 749 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 PTCD1O75127 700 aaKnown RBP10.52□□□□□ -0.73
COPB1-202ENST00000439561 SEC31AO94979 1220 aaKnown RBP10.52□□□□□ -0.73
COPB1-202ENST00000439561 SCRN1Q12765 414 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 GOLPH3LQ9H4A5 285 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 TOP1P11387 765 aaKnown RBP10.52□□□□□ -0.73
COPB1-202ENST00000439561 EIF4A1P60842 406 aaKnown RBP10.52□□□□□ -0.73
COPB1-202ENST00000439561 FKBP4Q02790 459 aaKnown RBP eCLIP10.52□□□□□ -0.73
COPB1-202ENST00000439561 RESTQ13127 1097 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 DPCR1Q3MIW9 517 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 SLFNL1Q499Z3 407 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 OLFM4Q6UX06 510 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 KSR2Q6VAB6 950 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 CCDC150Q8NCX0 1101 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 EPC1Q9H2F5 836 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 DNAJC5Q9H3Z4 198 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 AMOTL2Q9Y2J4 779 aa10.52□□□□□ -0.73
COPB1-202ENST00000439561 APPP05067 770 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 LMAN1P49257 510 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 UBASH3AP57075 661 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 RALYLQ86SE5 291 aaKnown RBP10.51□□□□□ -0.73
COPB1-202ENST00000439561 TTC21AQ8NDW8 1320 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 SLC39A6Q13433 755 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 SYCP1Q15431 976 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 PLEKHO1Q53GL0 409 aaPredicted RBP10.51□□□□□ -0.73
COPB1-202ENST00000439561 UBE3BQ7Z3V4 1068 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 TOMM22Q9NS69 142 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 ARHGEF10O15013 1369 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 SASH1O94885 1247 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 CLCN6P51797 869 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 PDE4CQ08493 712 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 TFCP2Q12800 502 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 PPP1R13BQ96KQ4 1090 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 SNRKQ9NRH2 765 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.51□□□□□ -0.736e-9■■■■■ 35.4
COPB1-202ENST00000439561 SBNO1A3KN83 1393 aa10.51□□□□□ -0.73
COPB1-202ENST00000439561 TAF5LO75529 589 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 EVCP57679 992 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 PSME1Q06323 249 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 IQCB1Q15051 598 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 HSP90AB3PQ58FF7 597 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 CCDC85AQ96PX6 553 aaPredicted RBP10.5□□□□□ -0.73
COPB1-202ENST00000439561 DBNDD2Q9BQY9 259 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 ABCA9Q8IUA7 1624 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 PIK3C2BO00750 1634 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 NDUFA8P51970 172 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 MCMDC2Q4G0Z9 681 aa10.5□□□□□ -0.73
COPB1-202ENST00000439561 ORC3Q9UBD5 711 aaPredicted RBP10.5□□□□□ -0.73
COPB1-202ENST00000439561 GOLGA8BA8MQT2 603 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CCP110O43303 1012 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CYP21A2P08686 494 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CASQ1P31415 396 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 KARSQ15046 597 aaKnown RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 LRRN4CLQ8ND94 238 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CPLX3Q8WVH0 158 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 IGSF1Q8N6C5 1336 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 GTF2E1P29083 439 aaPredicted RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 IRX5P78411 483 aaPredicted RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 CCZ1BP86790 482 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CCZ1P86791 482 aaPredicted RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 MCM6Q14566 821 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 KRBA2Q6ZNG9 492 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 DHX32Q7L7V1 743 aaKnown RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 C10orf67Q8IYJ2 551 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 LINS1Q8NG48 757 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 ZCCHC17Q9NP64 241 aaKnown RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 PCDHA7Q9UN72 937 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 HECW2Q9P2P5 1572 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 SPTLC2O15270 562 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 ALDH1L1O75891 902 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CSB-PGBD3P0DP91 1061 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 CDC25BP30305 580 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 HNRNPH2P55795 449 aaKnown RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 RBM6P78332 1123 aaKnown RBP10.49□□□□□ -0.73
COPB1-202ENST00000439561 NFXL1Q6ZNB6 911 aa10.49□□□□□ -0.73
COPB1-202ENST00000439561 GYS2P54840 703 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 FANCCQ00597 558 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 TAF7LQ5H9L4 462 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 AK7Q96M32 723 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 GJB4Q9NTQ9 266 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.48□□□□□ -0.73
COPB1-202ENST00000439561 ROBO2Q9HCK4 1378 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 PES1O00541 588 aaKnown RBP10.48□□□□□ -0.73
COPB1-202ENST00000439561 ATP1A3P13637 1013 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 RXRAP19793 462 aa10.48□□□□□ -0.73
COPB1-202ENST00000439561 CEBPAP49715 358 aaPredicted RBP10.48□□□□□ -0.73
COPB1-202ENST00000439561 TRIM29Q14134 588 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms