RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GBP3Q9H0R5 595 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.78□□□□□ -0.26e-7■■□□□ 12.4
CCDC88A-207ENST00000436346 CCDC172P0C7W6 258 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 A2MP01023 1474 aa13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 NAPAP54920 295 aa13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 USP37Q86T82 979 aa13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 JDP2Q8WYK2 163 aa13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 TTC12Q9H892 705 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 PUS7Q96PZ0 661 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 RPRD2Q5VT52 1461 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-207ENST00000436346 KANK3Q6NY19 840 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 BBXQ8WY36 941 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 LRRC45Q96CN5 670 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 SIRT1Q96EB6 747 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 CNNM2Q9H8M5 875 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 ESR2Q92731 530 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 BIN2Q9UBW5 565 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 SMC1AQ14683 1233 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 NAA16Q6N069 864 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 B4DLN1 442 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 PAFAH1B1P43034 410 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 MRPL12P52815 198 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 NAA15Q9BXJ9 866 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 LRRC27Q9C0I9 530 aa13.77□□□□□ -0.21
CCDC88A-207ENST00000436346 DDB1Q16531 1140 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 WDR62O43379 1518 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 SMARCC2Q8TAQ2 1214 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 RMND1Q9NWS8 449 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 JAG2Q9Y219 1238 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 CTR9Q6PD62 1173 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 MRVI1Q9Y6F6 885 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 RTL9Q8NET4 1388 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 MAGEB6Q8N7X4 407 aa13.76□□□□□ -0.21
CCDC88A-207ENST00000436346 ANXA1P04083 346 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 TRMT1Q9NXH9 659 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 MAATS1Q7Z4T9 603 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 XAGE3Q8WTP9 111 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 ORC3Q9UBD5 711 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 RTCBQ9Y3I0 505 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 FAM212AQ96EL1 285 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 IMPG2Q9BZV3 1241 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 MAGEB6P1A0A0J9YX57 407 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 AFMP43652 599 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 RGS22Q8NE09 1264 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 NLRP3Q96P20 1036 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 TAF12Q16514 161 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 SMARCC1Q92922 1105 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 C6orf50Q9HD87 102 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 RBM26Q5T8P6 1007 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 SYKP43405 635 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 PPM1EQ8WY54 764 aa13.75□□□□□ -0.21
CCDC88A-207ENST00000436346 ZBTB43O43298 467 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 UQCRFS1P1P0C7P4 283 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 ZMYND15Q9H091 742 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 SPECC1Q5M775 1068 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 EHBP1Q8NDI1 1231 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 MICAL3Q7RTP6 2002 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 NUMA1Q14980 2115 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 LRRC2Q9BYS8 371 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 KRT13P13646 458 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 ATP2B3Q16720 1220 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 TTC22Q5TAA0 569 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 NEK1Q96PY6 1258 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 ATP7AQ04656 1500 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 PLCG2P16885 1265 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 A0A1W2PRG0 241 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 IL2RBP14784 551 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 RRP36Q96EU6 259 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 CCDC184Q52MB2 194 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 GNPATO15228 680 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 GSDMDP57764 484 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 PAG1Q9NWQ8 432 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 ZBTB21Q9ULJ3 1066 aa13.74□□□□□ -0.21
CCDC88A-207ENST00000436346 IFI16Q16666 785 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PLVAPQ9BX97 442 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PEG3Q9GZU2 1588 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 CCDC175P0C221 793 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PDCL2Q8N4E4 241 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 GPATCH8Q9UKJ3 1502 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PICK1Q9NRD5 415 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PCDH11XQ9BZA7 1347 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 PCDH11YQ9BZA8 1340 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 GRM8O00222 908 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 RASAL2Q9UJF2 1139 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 URI1O94763 535 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 SLC39A6Q13433 755 aa13.73□□□□□ -0.21
CCDC88A-207ENST00000436346 ARID5AQ03989 594 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 CCDC102BQ68D86 513 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 GDPD2Q9HCC8 539 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 ASIC1P78348 528 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 RAB3GAP1Q15042 981 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 CCDC50Q8IVM0 306 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 MAP3K5Q99683 1374 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 DDX19AQ9NUU7 478 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 KLF18A0A0U1RQI7 1052 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 GJC1P36383 396 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 TMEM110-MUSTN1A8MSY1 372 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 EEF2P13639 858 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 FBLN1P23142 703 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 SP4Q02446 784 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms