RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF589Q86UQ0 364 aaPredicted RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 PLCD3Q8N3E9 789 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 SMARCC2Q8TAQ2 1214 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 XPO4Q9C0E2 1151 aaKnown RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 NAT10Q9H0A0 1025 aaKnown RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 PA2G4Q9UQ80 394 aaKnown RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 TADA3O75528 432 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 SFPQP23246 707 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP54-204ENST00000422491 USPL1Q5W0Q7 1092 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 TXLNBQ8N3L3 684 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 UBXN4Q92575 508 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 ERCC4Q92889 916 aaPredicted RBP12.49□□□□□ -0.41
USP54-204ENST00000422491 FANCGO15287 622 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 ATP8B1O43520 1251 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 TMC6Q7Z403 805 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 USP28Q96RU2 1077 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 POLR3GO15318 223 aaPredicted RBP12.48□□□□□ -0.41
USP54-204ENST00000422491 ST5P78524 1137 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 NAA16Q6N069 864 aaPredicted RBP12.48□□□□□ -0.41
USP54-204ENST00000422491 TRIM65Q6PJ69 517 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 SMARCE1Q969G3 411 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 EAF2Q96CJ1 260 aaPredicted RBP12.48□□□□□ -0.41
USP54-204ENST00000422491 BPIFA3Q9BQP9 254 aa12.48□□□□□ -0.41
USP54-204ENST00000422491 TAF5LO75529 589 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SCRN1Q12765 414 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 IFNKQ9P0W0 207 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 CHPF2Q9P2E5 772 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 ABCC6O95255 1503 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 NWD1Q149M9 1564 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 NUTM2FA1L443 756 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SASH3O75995 380 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SASH1O94885 1247 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SEC31AO94979 1220 aaKnown RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 TBC1D8O95759 1140 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 KRT32Q14532 448 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 DPCR1Q3MIW9 517 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 NUTM2GQ5VZR2 741 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 FMR1NBQ8N0W7 255 aaPredicted RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 FSIP1Q8NA03 581 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 FSD1Q9BTV5 496 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SRRTQ9BXP5 876 aaKnown RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 DNAI1Q9UI46 699 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 COL15A1P39059 1388 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 EFCAB8A8MWE9 144 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 SMC2O95347 1197 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 EIF2S2P20042 333 aaKnown RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 DHX8Q14562 1220 aaKnown RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 GORABQ5T7V8 394 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 ATL3Q6DD88 541 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 Q6ZUG5 572 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 NEK1Q96PY6 1258 aa12.47□□□□□ -0.41
USP54-204ENST00000422491 LLPHQ9BRT6 129 aaKnown RBP12.47□□□□□ -0.41
USP54-204ENST00000422491 NEDD4P46934 1319 aa12.46□□□□□ -0.41
USP54-204ENST00000422491 ALDH1L1O75891 902 aa12.46□□□□□ -0.41
USP54-204ENST00000422491 CCDC158Q5M9N0 1113 aa12.46□□□□□ -0.41
USP54-204ENST00000422491 FBXW7Q969H0 707 aa12.46□□□□□ -0.41
USP54-204ENST00000422491 TLR7Q9NYK1 1049 aaKnown RBP12.46□□□□□ -0.41
USP54-204ENST00000422491 ROBO2Q9HCK4 1378 aa12.46□□□□□ -0.42
USP54-204ENST00000422491 KRBA2Q6ZNG9 492 aa12.46□□□□□ -0.42
USP54-204ENST00000422491 HOMER1Q86YM7 354 aa12.46□□□□□ -0.42
USP54-204ENST00000422491 NSUN7Q8NE18 718 aaKnown RBP12.46□□□□□ -0.42
USP54-204ENST00000422491 BOLA2Q9H3K6 86 aa12.46□□□□□ -0.42
USP54-204ENST00000422491 PARP3Q9Y6F1 533 aa12.46□□□□□ -0.42
USP54-204ENST00000422491 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 CTDNEP1O95476 244 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 OAS2P29728 719 aaKnown RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 AMPHP49418 695 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 ILDR1Q86SU0 546 aaPredicted RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 MNS1Q8NEH6 495 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 CCDC8Q9H0W5 538 aaPredicted RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 ZCCHC17Q9NP64 241 aaKnown RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 CCP110O43303 1012 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 PFKFB2O60825 505 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 TPM1P09493 284 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 HOXB7P09629 217 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 HSP90B1P14625 803 aaKnown RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 ME1P48163 572 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 EIF4A1P60842 406 aaKnown RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 NCAPHQ15003 741 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 LRRFIP1Q32MZ4 808 aaKnown RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 CC2D1AQ6P1N0 951 aaPredicted RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 ZNF396Q96N95 335 aaPredicted RBP12.45□□□□□ -0.42
USP54-204ENST00000422491 CARD6Q9BX69 1037 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 KIAA1468Q9P260 1216 aa12.45□□□□□ -0.42
USP54-204ENST00000422491 PTPRUQ92729 1446 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 NRDCO43847 1150 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 MRPS27Q92552 414 aaKnown RBP12.44□□□□□ -0.42
USP54-204ENST00000422491 CEMIPQ8WUJ3 1361 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 MED1Q15648 1581 aaPredicted RBP12.44□□□□□ -0.42
USP54-204ENST00000422491 SMC1AQ14683 1233 aaKnown RBP12.44□□□□□ -0.42
USP54-204ENST00000422491 REXO1L1PQ8IX06 675 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 TMX1Q9H3N1 280 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 PCDHA7Q9UN72 937 aa12.44□□□□□ -0.42
USP54-204ENST00000422491 URI1O94763 535 aaPredicted RBP12.43□□□□□ -0.42
USP54-204ENST00000422491 ANXA1P04083 346 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 FOSBP53539 338 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 EVCP57679 992 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 PSME1Q06323 249 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 ZSCAN26Q16670 478 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms