RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 STAP2Q9UGK3 403 aa20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 RIPOR2Q9Y4F9 1068 aa20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 TAF1P21675 1872 aa20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 SALL3Q9BXA9 1300 aa20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 BRIP1Q9BX63 1249 aa20.95■□□□□ 0.95
CCDC28B-202ENST00000421922 ECHDC1Q9NTX5 307 aa20.95■□□□□ 0.95
CCDC28B-202ENST00000421922 AK9Q5TCS8 1911 aa20.95■□□□□ 0.94
CCDC28B-202ENST00000421922 ANKRD31Q8N7Z5 1873 aa20.95■□□□□ 0.94
CCDC28B-202ENST00000421922 PDE6BP35913 854 aa20.95■□□□□ 0.94
CCDC28B-202ENST00000421922 GORABQ5T7V8 394 aa20.95■□□□□ 0.94
CCDC28B-202ENST00000421922 TSHZ3Q63HK5 1081 aa20.95■□□□□ 0.94
CCDC28B-202ENST00000421922 GLRX3O76003 335 aaKnown RBP20.94■□□□□ 0.94
CCDC28B-202ENST00000421922 RPS8P62241 208 aaKnown RBP20.94■□□□□ 0.94
CCDC28B-202ENST00000421922 ATP2B3Q16720 1220 aa20.94■□□□□ 0.94
CCDC28B-202ENST00000421922 BSDC1Q9NW68 430 aaPredicted RBP20.94■□□□□ 0.94
CCDC28B-202ENST00000421922 A0A1B0GUL7 405 aa20.93■□□□□ 0.94
CCDC28B-202ENST00000421922 GRAPQ13588 217 aa20.93■□□□□ 0.94
CCDC28B-202ENST00000421922 GRAPLQ8TC17 118 aaPredicted RBP20.93■□□□□ 0.94
CCDC28B-202ENST00000421922 CELF1Q92879 486 aaKnown RBP20.93■□□□□ 0.94
CCDC28B-202ENST00000421922 TRIM6-TRIM34B2RNG4 842 aa20.92■□□□□ 0.94
CCDC28B-202ENST00000421922 PUM3Q15397 648 aaKnown RBP20.92■□□□□ 0.94
CCDC28B-202ENST00000421922 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.92■□□□□ 0.94
CCDC28B-202ENST00000421922 A0A1B0GUL6 1792 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 PDE8BO95263 885 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 SLC5A1P13866 664 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 CRY2Q49AN0 593 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 DBNDD2Q9BQY9 259 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 SPON1Q9HCB6 807 aa20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 TLR7Q9NYK1 1049 aaKnown RBP20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 DBNLQ9UJU6 430 aaKnown RBP20.91■□□□□ 0.94
CCDC28B-202ENST00000421922 GSPT1P15170 499 aaKnown RBP20.9■□□□□ 0.94
CCDC28B-202ENST00000421922 CHRNDQ07001 517 aa20.9■□□□□ 0.94
CCDC28B-202ENST00000421922 CASC1Q6TDU7 716 aa20.9■□□□□ 0.94
CCDC28B-202ENST00000421922 PDGFDQ9GZP0 370 aaPredicted RBP20.9■□□□□ 0.94
CCDC28B-202ENST00000421922 ARAP2Q8WZ64 1704 aa20.9■□□□□ 0.94
CCDC28B-202ENST00000421922 POLD1P28340 1107 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 KCNJ4P48050 445 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 TIMM10P62072 90 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 CCDC158Q5M9N0 1113 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 CNTROBQ8N137 903 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 HELBQ8NG08 1087 aaPredicted RBP20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 LPIN2Q92539 896 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 RILPL2Q969X0 211 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 ANKRD2Q9GZV1 360 aa20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 PPP1R1BQ9UD71 204 aaPredicted RBP20.89■□□□□ 0.94
CCDC28B-202ENST00000421922 CDC45O75419 566 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 IFIT1P09914 478 aaKnown RBP20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 NPR1P16066 1061 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 TTC39AQ5SRH9 613 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 VGLL2Q8N8G2 317 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 PI4K2BQ8TCG2 481 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 COL4A1P02462 1669 aa20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 COL11A2P13942 1736 aaPredicted RBP20.88■□□□□ 0.93
CCDC28B-202ENST00000421922 KLRG2A4D1S0 409 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 C8orf34Q49A92 452 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 XAGE2Q96GT9 111 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 CRAMP1Q96RY5 1269 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 BACH2Q9BYV9 841 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 H0YIN7 160 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 TAF5LO75529 589 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 ZBTB7AO95365 584 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 SDSP20132 328 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 HOXA10P31260 410 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 TMC4Q7Z404 712 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 MTFR1LQ9H019 292 aa20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 TMX4Q9H1E5 349 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-202ENST00000421922 CACNA1SQ13698 1873 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 EIF5BO60841 1220 aaKnown RBP20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 BBOX1O75936 387 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 ATP5JP18859 108 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 C2CD5Q86YS7 1000 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 MASTLQ96GX5 879 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 MINPP1Q9UNW1 487 aa20.86■□□□□ 0.93
CCDC28B-202ENST00000421922 MAP4K4O95819 1239 aaPredicted RBP20.85■□□□□ 0.93
CCDC28B-202ENST00000421922 ALDH1B1P30837 517 aa20.85■□□□□ 0.93
CCDC28B-202ENST00000421922 BOLA2Q9H3K6 86 aa20.85■□□□□ 0.93
CCDC28B-202ENST00000421922 PPEF1O14829 653 aaPredicted RBP20.84■□□□□ 0.93
CCDC28B-202ENST00000421922 SRGNP10124 158 aa20.84■□□□□ 0.93
CCDC28B-202ENST00000421922 ADORA1P30542 326 aa20.84■□□□□ 0.93
CCDC28B-202ENST00000421922 UBE4AQ14139 1066 aa20.84■□□□□ 0.93
CCDC28B-202ENST00000421922 ZNF622Q969S3 477 aaKnown RBP eCLIP20.84■□□□□ 0.939e-11■■■■□ 21.4
CCDC28B-202ENST00000421922 ANKIB1Q9P2G1 1089 aa20.84■□□□□ 0.93
CCDC28B-202ENST00000421922 C10orf71Q711Q0 1435 aa20.83■□□□□ 0.93
CCDC28B-202ENST00000421922 FGFR2P21802 821 aa20.83■□□□□ 0.93
CCDC28B-202ENST00000421922 DNAJC2Q99543 621 aaKnown RBP20.83■□□□□ 0.93
CCDC28B-202ENST00000421922 UPF2Q9HAU5 1272 aaKnown RBP20.83■□□□□ 0.93
CCDC28B-202ENST00000421922 ATF5Q9Y2D1 282 aaPredicted RBP20.83■□□□□ 0.93
CCDC28B-202ENST00000421922 UQCRFS1P1P0C7P4 283 aa20.82■□□□□ 0.92
CCDC28B-202ENST00000421922 EVI5LQ96CN4 794 aa20.82■□□□□ 0.92
CCDC28B-202ENST00000421922 XDHP47989 1333 aa20.82■□□□□ 0.92
CCDC28B-202ENST00000421922 DCAF8L1A6NGE4 600 aa20.81■□□□□ 0.92
CCDC28B-202ENST00000421922 STYK1Q6J9G0 422 aa20.81■□□□□ 0.92
CCDC28B-202ENST00000421922 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC28B-202ENST00000421922 LRRC37AA6NMS7 1700 aa20.81■□□□□ 0.92
CCDC28B-202ENST00000421922 CAVIN4Q5BKX8 364 aa20.8■□□□□ 0.92
CCDC28B-202ENST00000421922 TBC1D9Q6ZT07 1266 aa20.8■□□□□ 0.92
CCDC28B-202ENST00000421922 VPS37DQ86XT2 251 aa20.8■□□□□ 0.92
CCDC28B-202ENST00000421922 HAUS7Q99871 368 aa20.8■□□□□ 0.92
CCDC28B-202ENST00000421922 FSD1Q9BTV5 496 aa20.8■□□□□ 0.92
CCDC28B-202ENST00000421922 CNKSR1Q969H4 720 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms