RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GPTP24298 496 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 NUCB2P80303 420 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 PROSER3Q2NL68 480 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 KSR2Q6VAB6 950 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 RBM46Q8TBY0 533 aaKnown RBP17.97■□□□□ 0.47
USP4-203ENST00000415188 TAOK3Q9H2K8 898 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 ABCC12Q96J65 1359 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 FER1L6Q2WGJ9 1857 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 GLTPD2A6NH11 291 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 DDX58O95786 925 aaKnown RBP17.96■□□□□ 0.47
USP4-203ENST00000415188 CHMLP26374 656 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 GTF2E1P29083 439 aaPredicted RBP17.96■□□□□ 0.47
USP4-203ENST00000415188 PDIA6Q15084 440 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 LRP10Q7Z4F1 713 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 RHPN1Q8TCX5 695 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 C7orf43Q8WVR3 580 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 ERBB4Q15303 1308 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 UBN2Q6ZU65 1347 aa17.96■□□□□ 0.47
USP4-203ENST00000415188 TNRC6CQ9HCJ0 1690 aaKnown RBP17.96■□□□□ 0.47
USP4-203ENST00000415188 NUP98P52948 1817 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 SRGAP3O43295 1099 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 SURF6O75683 361 aaKnown RBP17.95■□□□□ 0.46
USP4-203ENST00000415188 ERFEQ4G0M1 354 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 OLFM4Q6UX06 510 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 ARFGEF2Q9Y6D5 1785 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 LTBP3Q9NS15 1303 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 GOLGA6L22H0YM25 854 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 ERC1Q8IUD2 1116 aa17.95■□□□□ 0.46
USP4-203ENST00000415188 DDX21Q9NR30 783 aaKnown RBP eCLIP17.95■□□□□ 0.46
USP4-203ENST00000415188 TTC41PQ6P2S7 1318 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 FSD2A1L4K1 749 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 TRIM6-TRIM34B2RNG4 842 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 SOGA3Q5TF21 947 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 SUSD4Q5VX71 490 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 NYXQ9GZU5 481 aa17.94■□□□□ 0.46
USP4-203ENST00000415188 UTYO14607 1347 aa17.93■□□□□ 0.46
USP4-203ENST00000415188 NBPF7P0C2Y1 421 aaPredicted RBP17.93■□□□□ 0.46
USP4-203ENST00000415188 APLP1P51693 650 aa17.93■□□□□ 0.46
USP4-203ENST00000415188 CCDC93Q567U6 631 aa17.93■□□□□ 0.46
USP4-203ENST00000415188 GIGYF2Q6Y7W6 1299 aaKnown RBP17.93■□□□□ 0.46
USP4-203ENST00000415188 ZNF34Q8IZ26 560 aa17.93■□□□□ 0.46
USP4-203ENST00000415188 LINS1Q8NG48 757 aa17.93■□□□□ 0.46
USP4-203ENST00000415188 GOLGA6L3A6NEY3 463 aa17.92■□□□□ 0.46
USP4-203ENST00000415188 MAP3K2Q9Y2U5 619 aa17.92■□□□□ 0.46
USP4-203ENST00000415188 POTECB2RU33 542 aa17.91■□□□□ 0.46
USP4-203ENST00000415188 VEGFAP15692 232 aaPredicted RBP17.91■□□□□ 0.46
USP4-203ENST00000415188 CRY2Q49AN0 593 aa17.91■□□□□ 0.46
USP4-203ENST00000415188 RILPL2Q969X0 211 aa17.91■□□□□ 0.46
USP4-203ENST00000415188 C9orf78Q9NZ63 289 aaPredicted RBP17.91■□□□□ 0.46
USP4-203ENST00000415188 DICER1Q9UPY3 1922 aaKnown RBP17.9■□□□□ 0.46
USP4-203ENST00000415188 NTSR2O95665 410 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 HTRA3P83110 453 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 FSTL1Q12841 308 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 AIMP1Q12904 312 aaKnown RBP17.9■□□□□ 0.46
USP4-203ENST00000415188 CNTROBQ8N137 903 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 PI4K2BQ8TCG2 481 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 XAGE3Q8WTP9 111 aa17.9■□□□□ 0.46
USP4-203ENST00000415188 ZNF277Q9NRM2 450 aaPredicted RBP17.9■□□□□ 0.46
USP4-203ENST00000415188 GLRX3O76003 335 aaKnown RBP17.89■□□□□ 0.45
USP4-203ENST00000415188 CYP2E1P05181 493 aaPredicted RBP17.89■□□□□ 0.45
USP4-203ENST00000415188 ALDH1B1P30837 517 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 TSHZ3Q63HK5 1081 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 DPY19L2Q6NUT2 758 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 C3orf67Q6ZVT6 689 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 COPS6Q7L5N1 327 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 GPATCH3Q96I76 525 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 IL1RAPL2Q9NP60 686 aa17.89■□□□□ 0.45
USP4-203ENST00000415188 FKBP4Q02790 459 aaKnown RBP eCLIP17.88■□□□□ 0.45
USP4-203ENST00000415188 SLC51AQ86UW1 340 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 WDR90Q96KV7 1748 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 GRM8O00222 908 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 DDNO94850 711 aaPredicted RBP17.88■□□□□ 0.45
USP4-203ENST00000415188 OS9Q13438 667 aaPredicted RBP17.88■□□□□ 0.45
USP4-203ENST00000415188 CLASRPQ8N2M8 674 aaKnown RBP17.88■□□□□ 0.45
USP4-203ENST00000415188 SMC1BQ8NDV3 1235 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 RPGRQ92834 1020 aaKnown RBP17.88■□□□□ 0.45
USP4-203ENST00000415188 ANO2Q9NQ90 1003 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 FOXD4L1Q9NU39 408 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 BRPF3Q9ULD4 1205 aa17.88■□□□□ 0.45
USP4-203ENST00000415188 RIC1Q4ADV7 1423 aa17.87■□□□□ 0.45
USP4-203ENST00000415188 PARP10Q53GL7 1025 aa17.87■□□□□ 0.45
USP4-203ENST00000415188 RTKN2Q8IZC4 609 aa17.87■□□□□ 0.45
USP4-203ENST00000415188 DNAJC5GQ8N7S2 189 aa17.87■□□□□ 0.45
USP4-203ENST00000415188 BAG4O95429 457 aaKnown RBP17.86■□□□□ 0.45
USP4-203ENST00000415188 HOXA10P31260 410 aaPredicted RBP17.86■□□□□ 0.45
USP4-203ENST00000415188 MRE11P49959 708 aa17.86■□□□□ 0.45
USP4-203ENST00000415188 NEXNQ0ZGT2 675 aa17.86■□□□□ 0.45
USP4-203ENST00000415188 INTS4Q96HW7 963 aaKnown RBP17.86■□□□□ 0.45
USP4-203ENST00000415188 UTP14AQ9BVJ6 771 aaKnown RBP17.86■□□□□ 0.45
USP4-203ENST00000415188 SNED1Q8TER0 1413 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 RAD50Q92878 1312 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 SGSM2O43147 1006 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 NEK4P51957 841 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 CUL4AQ13619 759 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 SYNE4Q8N205 404 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 RUFY2Q8WXA3 655 aa17.85■□□□□ 0.45
USP4-203ENST00000415188 ZNF541Q9H0D2 1346 aa17.84■□□□□ 0.45
USP4-203ENST00000415188 HSPA4P34932 840 aa17.84■□□□□ 0.45
USP4-203ENST00000415188 ECHDC1Q9NTX5 307 aa17.84■□□□□ 0.45
USP4-203ENST00000415188 IARSP41252 1262 aaKnown RBP17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms