RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-205	ENST00000414879	FRMPD1	Q5SYB0	1578 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	KDM4A	O75164	1064 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	GRPEL1	Q9HAV7	217 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	SNRK	Q9NRH2	765 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	RBM8A	Q9Y5S9	174 aa	Known RBP	13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	MAST3	O60307	1309 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	ORC3	Q9UBD5	711 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	CCNL1	Q9UK58	526 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	IGSF1	Q8N6C5	1336 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	BRPF1	P55201	1214 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	SLC9C2	Q5TAH2	1124 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	TFCP2L1	Q9NZI6	479 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	ARHGEF25	Q86VW2	580 aa		13.87	□□□□□ -0.19
PTPRF-205	ENST00000414879	ROBO2	Q9HCK4	1378 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	ZBTB43	O43298	467 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	PHKG2	P15735	406 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	TRIM21	P19474	475 aa	Known RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	RBM25	P49756	843 aa	Known RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	TSG101	Q99816	390 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	RNF123	Q5XPI4	1314 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	KIF2A	O00139	706 aa	Predicted RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	TCP11L1	Q9NUJ3	509 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	SLC4A4	Q9Y6R1	1079 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	ADGRL3	Q9HAR2	1447 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	SETBP1	Q9Y6X0	1596 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	MAGEB6P1	A0A0J9YX57	407 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	PUM3	Q15397	648 aa	Known RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	CWF19L2	Q2TBE0	894 aa	Known RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	PPP4R3A	Q6IN85	833 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	INTS4	Q96HW7	963 aa	Known RBP	13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	STK32B	Q9NY57	414 aa		13.86	□□□□□ -0.19
PTPRF-205	ENST00000414879	PLEKHM2	Q8IWE5	1019 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	CNBD1	Q8NA66	436 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	BICC1	Q9H694	974 aa	Known RBP	13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	GJB2	P29033	226 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	TEX35	Q5T0J7	233 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	STXBP4	Q6ZWJ1	553 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	RLBP1	P12271	317 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	ATL3	Q6DD88	541 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	MROH5	Q6ZUA9	1318 aa		13.85	□□□□□ -0.19
PTPRF-205	ENST00000414879	GNPAT	O15228	680 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	DES	P17661	470 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	CALML3	P27482	149 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	RUFY1	Q96T51	708 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	ZNF397	Q8NF99	534 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	CALML4	Q96GE6	196 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	MAP7D2	Q96T17	732 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	ZHX3	Q9H4I2	956 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	CCDC171	Q6TFL3	1326 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	UBE2H	P62256	183 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	GCKR	Q14397	625 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	SUPT20H	Q8NEM7	779 aa		13.84	□□□□□ -0.19
PTPRF-205	ENST00000414879	TSPY3	P0CV98	308 aa		13.83	□□□□□ -0.19
PTPRF-205	ENST00000414879	TSPY8	P0CW00	308 aa		13.83	□□□□□ -0.19
PTPRF-205	ENST00000414879	KCNG4	Q8TDN1	519 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	FEZ1	Q99689	392 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	ABCC4	O15439	1325 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	SSB	P05455	408 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	TFCP2	Q12800	502 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	IFIT1B	Q5T764	474 aa	Known RBP	13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	TTC6	Q86TZ1	520 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	USP21	Q9UK80	565 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	KDR	P35968	1356 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	NEMF	O60524	1076 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	LDHB	P07195	334 aa	Known RBP	13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	SSFA2	P28290	1259 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	RTN1	Q16799	776 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	TMX3	Q96JJ7	454 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	DEF6	Q9H4E7	631 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	LGR6	Q9HBX8	967 aa		13.83	□□□□□ -0.2
PTPRF-205	ENST00000414879	ARHGEF40	Q8TER5	1519 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	KLF18	A0A0U1RQI7	1052 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879		B4DLN1	442 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	GIGYF1	O75420	1035 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	MRPL12	P52815	198 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	PPP2R5B	Q15173	497 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	IQCE	Q6IPM2	695 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	NAP1L4	Q99733	375 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	NMI	Q13287	307 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	FERMT3	Q86UX7	667 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	USP19	O94966	1318 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	CHML	P26374	656 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	TCIRG1	Q13488	830 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	WDR66	Q8TBY9	1149 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	CAGE1	Q8TC20	777 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	TANGO6	Q9C0B7	1094 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	NCAPD2	Q15021	1401 aa		13.82	□□□□□ -0.2
PTPRF-205	ENST00000414879	ZSCAN22	P10073	491 aa	Predicted RBP	13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	LPIN2	Q92539	896 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	BRF1	Q92994	677 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	ZNF496	Q96IT1	587 aa	Predicted RBP	13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	POTEJ	P0CG39	1038 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	KRT24	Q2M2I5	525 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	UVSSA	Q2YD98	709 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	HSP90B2P	Q58FF3	399 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	TNNI3K	Q59H18	835 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	FKBP15	Q5T1M5	1219 aa		13.81	□□□□□ -0.2
PTPRF-205	ENST00000414879	DHX32	Q7L7V1	743 aa	Known RBP	13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms