RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 E9PSI1 815 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 PLCB3Q01970 1234 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 DMRTB1Q96MA1 342 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 VPS8Q8N3P4 1428 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 SCAPERQ9BY12 1400 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 IRS1P35568 1242 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 CCDC155Q8N6L0 562 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 TRIM47Q96LD4 638 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 GPC6Q9Y625 555 aaPredicted RBP9.65□□□□□ -0.86
USP40-202ENST00000409945 CCNB3Q8WWL7 1395 aa9.65□□□□□ -0.86
USP40-202ENST00000409945 EHBP1L1Q8N3D4 1523 aa9.65□□□□□ -0.87
USP40-202ENST00000409945 LDHBP07195 334 aaKnown RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 LDLRAD1Q5T700 205 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 DUSP9Q99956 384 aaKnown RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 IRX2Q9BZI1 471 aaPredicted RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 ARID4BQ4LE39 1312 aaPredicted RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 EIF1AYO14602 144 aaKnown RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 TNFRSF21O75509 655 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 PDE3BQ13370 1112 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 ENOX2Q16206 610 aaKnown RBP9.64□□□□□ -0.87
USP40-202ENST00000409945 PIK3R5Q8WYR1 880 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 ANKIB1Q9P2G1 1089 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 MAGI2Q86UL8 1455 aa9.64□□□□□ -0.87
USP40-202ENST00000409945 UBAP1LF5GYI3 381 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 EFSO43281 561 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 RAB44Q7Z6P3 723 aaPredicted RBP9.63□□□□□ -0.87
USP40-202ENST00000409945 IGSF5Q9NSI5 407 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 CNTN3Q9P232 1028 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 CFDP1Q9UEE9 299 aaPredicted RBP9.63□□□□□ -0.87
USP40-202ENST00000409945 GJA3Q9Y6H8 435 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 ZNF518AQ6AHZ1 1483 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 PREX2Q70Z35 1606 aa9.63□□□□□ -0.87
USP40-202ENST00000409945 POGZQ7Z3K3 1410 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 BNIP3LO60238 219 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 RECKO95980 971 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 USP5P45974 858 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 NEUROD4Q9HD90 331 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 GPR25O00155 361 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 XYLBO75191 536 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 KRT25Q7Z3Z0 450 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 PGBD3Q8N328 593 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 ZNF837Q96EG3 531 aaPredicted RBP9.62□□□□□ -0.87
USP40-202ENST00000409945 ABHD17AQ96GS6 310 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 CHRDQ9H2X0 955 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 PARP2Q9UGN5 583 aa9.62□□□□□ -0.87
USP40-202ENST00000409945 RICTORQ6R327 1708 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 PLEKHH2Q8IVE3 1493 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 CYP2E1P05181 493 aaPredicted RBP9.61□□□□□ -0.87
USP40-202ENST00000409945 POLR3DP05423 398 aaPredicted RBP9.61□□□□□ -0.87
USP40-202ENST00000409945 TARSP26639 723 aaKnown RBP9.61□□□□□ -0.87
USP40-202ENST00000409945 COL19A1Q14993 1142 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 HIF1AQ16665 826 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 NLRP8Q86W28 1048 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 ELP3Q9H9T3 547 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 NDFIP2Q9NV92 336 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 ZFATQ9P243 1243 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 ZMYM4Q5VZL5 1548 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 ZFYVE16Q7Z3T8 1539 aa9.61□□□□□ -0.87
USP40-202ENST00000409945 ITSN2Q9NZM3 1697 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 LAPTM4AQ15012 233 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 SAMD5Q5TGI4 173 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 ZNF438Q7Z4V0 828 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 NUCKS1Q9H1E3 243 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 SUPT6HQ7KZ85 1726 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 CDC42BPBQ9Y5S2 1711 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 TIAM1Q13009 1591 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 KHNYNO15037 678 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 SASH3O75995 380 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 MAPTP10636 758 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 TNP2Q05952 138 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 MRPL58Q14197 206 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 C1orf127Q8N9H9 656 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 EPS8L3Q8TE67 593 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 GTPBP3Q969Y2 492 aaKnown RBP9.6□□□□□ -0.87
USP40-202ENST00000409945 CSRNP1Q96S65 589 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 ARHGEF40Q8TER5 1519 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 CDC42BPAQ5VT25 1732 aa9.6□□□□□ -0.87
USP40-202ENST00000409945 FRMPD1Q5SYB0 1578 aa9.59□□□□□ -0.87
USP40-202ENST00000409945 ATXN7O15265 892 aaPredicted RBP9.59□□□□□ -0.87
USP40-202ENST00000409945 CD33P20138 364 aa9.59□□□□□ -0.87
USP40-202ENST00000409945 ITGA6P23229 1130 aa9.59□□□□□ -0.87
USP40-202ENST00000409945 SLC30A3Q99726 388 aa9.59□□□□□ -0.87
USP40-202ENST00000409945 MAP3K1Q13233 1512 aa9.59□□□□□ -0.87
USP40-202ENST00000409945 EREGO14944 169 aa9.58□□□□□ -0.88
USP40-202ENST00000409945 ZNF326Q5BKZ1 582 aaKnown RBP9.58□□□□□ -0.88
USP40-202ENST00000409945 EFHC2Q5JST6 749 aa9.58□□□□□ -0.88
USP40-202ENST00000409945 GPATCH8Q9UKJ3 1502 aaKnown RBP9.58□□□□□ -0.88
USP40-202ENST00000409945 PRPF40AO75400 957 aaKnown RBP9.58□□□□□ -0.88
USP40-202ENST00000409945 BACH2Q9BYV9 841 aa9.58□□□□□ -0.88
USP40-202ENST00000409945 GSX2Q9BZM3 304 aa9.58□□□□□ -0.88
USP40-202ENST00000409945 FAM157BP0CG42 384 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 VEGFBP49765 207 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 Q6ZNB5 142 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 LATS2Q9NRM7 1088 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 KANSL3Q9P2N6 904 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 PCDHGC4Q9Y5F7 938 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 ABCC1P33527 1531 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 HECW2Q9P2P5 1572 aa9.57□□□□□ -0.88
USP40-202ENST00000409945 PCSK2P16519 638 aa9.56□□□□□ -0.88
USP40-202ENST00000409945 TSNAXIP1Q2TAA8 658 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms