RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLAIN2Q9P270 581 aa15.85■□□□□ 0.13
VPS54-203ENST00000409558 XRN1Q8IZH2 1706 aaKnown RBP15.85■□□□□ 0.13
VPS54-203ENST00000409558 COL15A1P39059 1388 aa15.85■□□□□ 0.13
VPS54-203ENST00000409558 HLFQ16534 295 aa15.85■□□□□ 0.13
VPS54-203ENST00000409558 ATP5JP18859 108 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 LDHAL6AQ6ZMR3 332 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 DENND2AQ9ULE3 1009 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.84■□□□□ 0.13
VPS54-203ENST00000409558 ISM2Q6H9L7 571 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 TNMDQ9H2S6 317 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 FOXO4P98177 505 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 INCENPQ9NQS7 918 aa15.84■□□□□ 0.13
VPS54-203ENST00000409558 ZAP70P43403 619 aa15.83■□□□□ 0.13
VPS54-203ENST00000409558 SPATA31A3Q5VYP0 1347 aa15.83■□□□□ 0.12
VPS54-203ENST00000409558 TRMT112Q9UI30 125 aaKnown RBP15.83■□□□□ 0.12
VPS54-203ENST00000409558 SCRN1Q12765 414 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 RRP12Q5JTH9 1297 aaKnown RBP15.82■□□□□ 0.12
VPS54-203ENST00000409558 KIF6Q6ZMV9 814 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 ATG9AQ7Z3C6 839 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 NUP62CLQ9H1M0 184 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 HSP90AA2PQ14568 343 aaPredicted RBP15.82■□□□□ 0.12
VPS54-203ENST00000409558 CCDC158Q5M9N0 1113 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 PXDNLA1KZ92 1463 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 M0R2C6 588 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 EYA2O00167 538 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 IFIT5Q13325 482 aaKnown RBP15.82■□□□□ 0.12
VPS54-203ENST00000409558 KBTBD3Q8NAB2 608 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 ZNF609O15014 1411 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 CCDC24Q8N4L8 307 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 XAGE2Q96GT9 111 aa15.82■□□□□ 0.12
VPS54-203ENST00000409558 NR1I2O75469 434 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 BICDL1Q6ZP65 573 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 OSBP2Q969R2 916 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 LRP10Q7Z4F1 713 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 CCDC39Q9UFE4 941 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 ATP2B1P20020 1258 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 ME1P48163 572 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 SLC4A8Q2Y0W8 1093 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 PIGBQ92521 554 aa15.81■□□□□ 0.12
VPS54-203ENST00000409558 KIAA2012Q0VF49 1180 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 HAUS7Q99871 368 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 DNAJC25Q9H1X3 360 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 HSPD1P10809 573 aaKnown RBP15.8■□□□□ 0.12
VPS54-203ENST00000409558 MYL10Q9BUA6 226 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 GREM2Q9H772 168 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.8■□□□□ 0.12
VPS54-203ENST00000409558 ZKSCAN5Q9Y2L8 839 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 PTPDC1A2A3K4 754 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 PCDH11XQ9BZA7 1347 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 PCDH11YQ9BZA8 1340 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 USP42Q9H9J4 1324 aaKnown RBP15.8■□□□□ 0.12
VPS54-203ENST00000409558 ANKRD1Q15327 319 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 ANO6Q4KMQ2 910 aa15.8■□□□□ 0.12
VPS54-203ENST00000409558 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
VPS54-203ENST00000409558 SF3A1Q15459 793 aaKnown RBP15.79■□□□□ 0.12
VPS54-203ENST00000409558 TRIM5Q9C035 493 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 RGPD5Q99666 1765 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 CPLX1O14810 134 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 PDCP20941 246 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 HEG1Q9ULI3 1381 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 BIN1O00499 593 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 IL15P40933 162 aaPredicted RBP15.79■□□□□ 0.12
VPS54-203ENST00000409558 PUS7LQ9H0K6 701 aaKnown RBP15.79■□□□□ 0.12
VPS54-203ENST00000409558 ZBTB1Q9Y2K1 713 aa15.79■□□□□ 0.12
VPS54-203ENST00000409558 MAST3O60307 1309 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 E7EWF7 191 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 AP5Z1O43299 807 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 MAP3K11Q16584 847 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 TM6SF1Q9BZW5 370 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 UQCRHLA0A096LP55 91 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 UQCRHP07919 91 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 LEO1Q8WVC0 666 aaPredicted RBP15.78■□□□□ 0.12
VPS54-203ENST00000409558 NOL7Q9UMY1 257 aaKnown RBP15.78■□□□□ 0.12
VPS54-203ENST00000409558 WDR17Q8IZU2 1322 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 H7C1W4 665 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 CCDC192P0DO97 292 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 ITGA6P23229 1130 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 CSPP1Q1MSJ5 1256 aa15.78■□□□□ 0.12
VPS54-203ENST00000409558 RALYLQ86SE5 291 aaKnown RBP15.77■□□□□ 0.12
VPS54-203ENST00000409558 UTYO14607 1347 aa15.77■□□□□ 0.12
VPS54-203ENST00000409558 SLC9C2Q5TAH2 1124 aa15.77■□□□□ 0.12
VPS54-203ENST00000409558 GNL2Q13823 731 aaKnown RBP15.77■□□□□ 0.11
VPS54-203ENST00000409558 SASS6Q6UVJ0 657 aa15.77■□□□□ 0.11
VPS54-203ENST00000409558 GTF3C6Q969F1 213 aa15.77■□□□□ 0.11
VPS54-203ENST00000409558 AIFM3Q96NN9 605 aa15.77■□□□□ 0.11
VPS54-203ENST00000409558 ZKSCAN3Q9BRR0 538 aa15.77■□□□□ 0.11
VPS54-203ENST00000409558 KLF18A0A0U1RQI7 1052 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 RNF113AO15541 343 aaKnown RBP15.76■□□□□ 0.11
VPS54-203ENST00000409558 MICU3Q86XE3 530 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 JAG2Q9Y219 1238 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 GOLGA8BA8MQT2 603 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 CASP7P55210 303 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 TYRO3Q06418 890 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 ATP2B3Q16720 1220 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 DHX32Q7L7V1 743 aaKnown RBP15.76■□□□□ 0.11
VPS54-203ENST00000409558 MST1RQ04912 1400 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 NCAPD2Q15021 1401 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 KRT32Q14532 448 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 PGBD1Q96JS3 809 aa15.76■□□□□ 0.11
VPS54-203ENST00000409558 NRBP1Q9UHY1 535 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 223.2 ms