RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PHF8Q9UPP1 1060 aa24.69■■□□□ 1.54
CTCF-202ENST00000401394 ZNF609O15014 1411 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 CRYBG1Q9Y4K1 1723 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 GOLGA6L19H0YKK7 550 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 TPM3P06753 285 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 UBE3BQ7Z3V4 1068 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 CACNA1FO60840 1977 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 BIN1O00499 593 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 PSME1Q06323 249 aa24.68■■□□□ 1.54
CTCF-202ENST00000401394 SNW1Q13573 536 aaKnown RBP24.67■■□□□ 1.54
CTCF-202ENST00000401394 AOPEPQ8N6M6 819 aa24.67■■□□□ 1.54
CTCF-202ENST00000401394 SMTNL1A8MU46 457 aa24.67■■□□□ 1.54
CTCF-202ENST00000401394 TRHP20396 242 aaPredicted RBP24.67■■□□□ 1.54
CTCF-202ENST00000401394 TTLL5Q6EMB2 1281 aa24.67■■□□□ 1.54
CTCF-202ENST00000401394 A0A1B0GVL5 298 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 CCDC69A6NI79 296 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 ANKRD1Q15327 319 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 PLEKHO1Q53GL0 409 aaPredicted RBP24.66■■□□□ 1.54
CTCF-202ENST00000401394 UTP14CQ5TAP6 766 aaKnown RBP24.66■■□□□ 1.54
CTCF-202ENST00000401394 DHX40Q8IX18 779 aaKnown RBP24.66■■□□□ 1.54
CTCF-202ENST00000401394 NEURL1BA8MQ27 555 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 RGPD2P0DJD1 1756 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 ILDR1Q86SU0 546 aaPredicted RBP24.66■■□□□ 1.54
CTCF-202ENST00000401394 TBX22Q9Y458 520 aa24.66■■□□□ 1.54
CTCF-202ENST00000401394 PTPDC1A2A3K4 754 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 NSUN7Q8NE18 718 aaKnown RBP24.65■■□□□ 1.54
CTCF-202ENST00000401394 FER1L4A9Z1Z3 1794 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 BECN2A8MW95 431 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 HOXB7P09629 217 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 ME1P48163 572 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 TIMM10P62072 90 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 KMT5BQ4FZB7 885 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 HSP90AB3PQ58FF7 597 aa24.65■■□□□ 1.54
CTCF-202ENST00000401394 GCKRQ14397 625 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 ELF2Q15723 593 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 TNNI3KQ59H18 835 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 NFATC2IPQ8NCF5 419 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 NEUROD6Q96NK8 337 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 FPGT-TNNI3KV9GXZ4 949 aa24.64■■□□□ 1.54
CTCF-202ENST00000401394 POLR3DP05423 398 aaPredicted RBP24.64■■□□□ 1.53
CTCF-202ENST00000401394 PTPN12Q05209 780 aaKnown RBP24.64■■□□□ 1.53
CTCF-202ENST00000401394 GOLIM4O00461 696 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 ZBTB9Q96C00 473 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 ORAI2Q96SN7 254 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 FSIP1Q8NA03 581 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 HIP1O00291 1037 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 CCZ1BP86790 482 aa24.63■■□□□ 1.53
CTCF-202ENST00000401394 CCZ1P86791 482 aaPredicted RBP24.63■■□□□ 1.53
CTCF-202ENST00000401394 ZNF771Q7L3S4 317 aaPredicted RBP24.63■■□□□ 1.53
CTCF-202ENST00000401394 ZBTB22O15209 634 aa24.62■■□□□ 1.53
CTCF-202ENST00000401394 ANKRD24Q8TF21 1146 aa24.62■■□□□ 1.53
CTCF-202ENST00000401394 DDX21Q9NR30 783 aaKnown RBP eCLIP24.62■■□□□ 1.53
CTCF-202ENST00000401394 SNRKQ9NRH2 765 aa24.62■■□□□ 1.53
CTCF-202ENST00000401394 MARF1Q9Y4F3 1742 aaKnown RBP24.61■■□□□ 1.53
CTCF-202ENST00000401394 HAND2P61296 217 aa24.61■■□□□ 1.53
CTCF-202ENST00000401394 ZC3H6P61129 1189 aaKnown RBP24.61■■□□□ 1.53
CTCF-202ENST00000401394 GOLGA8FQ08AF8 430 aa24.61■■□□□ 1.53
CTCF-202ENST00000401394 GOLGA8DPQ0D2H9 430 aa24.61■■□□□ 1.53
CTCF-202ENST00000401394 USPL1Q5W0Q7 1092 aa24.6■■□□□ 1.53
CTCF-202ENST00000401394 N4BP2Q86UW6 1770 aaPredicted RBP24.6■■□□□ 1.53
CTCF-202ENST00000401394 PTPN14Q15678 1187 aa24.6■■□□□ 1.53
CTCF-202ENST00000401394 DPCR1Q3MIW9 517 aa24.6■■□□□ 1.53
CTCF-202ENST00000401394 ZNF496Q96IT1 587 aaPredicted RBP24.6■■□□□ 1.53
CTCF-202ENST00000401394 FBXO38Q6PIJ6 1188 aa24.6■■□□□ 1.53
CTCF-202ENST00000401394 NBPF11Q86T75 865 aa24.6■■□□□ 1.53
CTCF-202ENST00000401394 GCP02774 474 aa24.59■■□□□ 1.53
CTCF-202ENST00000401394 RFX5P48382 616 aaPredicted RBP24.59■■□□□ 1.53
CTCF-202ENST00000401394 GTPBP4Q9BZE4 634 aaKnown RBP24.59■■□□□ 1.53
CTCF-202ENST00000401394 ERBB3P21860 1342 aa24.59■■□□□ 1.53
CTCF-202ENST00000401394 ZNF594Q96JF6 807 aaPredicted RBP24.59■■□□□ 1.53
CTCF-202ENST00000401394 SLIT1O75093 1534 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 NDUFA8P51970 172 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 MCMDC2Q4G0Z9 681 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 KIF18AQ8NI77 898 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 HMG20BQ9P0W2 317 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 PCDHA7Q9UN72 937 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 CLIC4Q9Y696 253 aa24.58■■□□□ 1.53
CTCF-202ENST00000401394 GORABQ5T7V8 394 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 OGFRQ9NZT2 677 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 CFAP45Q9UL16 551 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 KINO60870 393 aaKnown RBP24.57■■□□□ 1.52
CTCF-202ENST00000401394 DDX58O95786 925 aaKnown RBP24.57■■□□□ 1.52
CTCF-202ENST00000401394 STX1AQ16623 288 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 ENGASEQ8NFI3 743 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 DDX41Q9UJV9 622 aaKnown RBP24.57■■□□□ 1.52
CTCF-202ENST00000401394 ARHGAP23Q9P227 1491 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 ATP5JP18859 108 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 TSGA10IPQ3SY00 556 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 ZNF790Q6PG37 636 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.57■■□□□ 1.52
CTCF-202ENST00000401394 SDF4Q9BRK5 362 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 RCOR1Q9UKL0 485 aa24.57■■□□□ 1.52
CTCF-202ENST00000401394 CCDC73Q6ZRK6 1079 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 CCDC85AQ96PX6 553 aaPredicted RBP24.56■■□□□ 1.52
CTCF-202ENST00000401394 CGNQ9P2M7 1197 aaKnown RBP24.56■■□□□ 1.52
CTCF-202ENST00000401394 FDPSP14324 419 aaKnown RBP24.56■■□□□ 1.52
CTCF-202ENST00000401394 NEXNQ0ZGT2 675 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 HSP90AA4PQ58FG1 418 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 LMBR1LQ6UX01 489 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 NYAP1Q6ZVC0 841 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms