RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CCDC6Q16204 474 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 SSH1Q8WYL5 1049 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 ERICH4A6NGS2 130 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 PSMA7O14818 248 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 HARSP12081 509 aaKnown RBP8.18□□□□□ -1.1
UPF2-203ENST00000397053 RTN1Q16799 776 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 CCDC183Q5T5S1 534 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 RRAGBQ5VZM2 374 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 MCM9Q9NXL9 1143 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 FGD5Q6ZNL6 1462 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 CEP135Q66GS9 1140 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 ISM2Q6H9L7 571 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 EHBP1Q8NDI1 1231 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 PAIP2Q9BPZ3 127 aaKnown RBP8.18□□□□□ -1.1
UPF2-203ENST00000397053 TMX1Q9H3N1 280 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 PFDN4Q9NQP4 134 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 GAS8O95995 478 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 RBM27Q9P2N5 1060 aaKnown RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 PRDM2Q13029 1718 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 C9orf84Q5VXU9 1444 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 MCM4P33991 863 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 SPAG1Q07617 926 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TCIRG1Q13488 830 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TMC6Q7Z403 805 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TTC6Q86TZ1 520 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 LARP6Q9BRS8 491 aaKnown RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 FAM107BQ9H098 131 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TRMT1Q9NXH9 659 aaKnown RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 DYNC1I1O14576 645 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 AFMP43652 599 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 ZBTB16Q05516 673 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 ALDH1L2Q3SY69 923 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 CFAP58Q5T655 872 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 SLC9C2Q5TAH2 1124 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 DZIP3Q86Y13 1208 aaKnown RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 GOLGA1Q92805 767 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 SMC6Q96SB8 1091 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TRIM6Q9C030 488 aaPredicted RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 NOC2LQ9Y3T9 749 aaKnown RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 CYLC1P35663 651 aaPredicted RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 BIRC3Q13489 604 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 FBXO31Q5XUX0 539 aaPredicted RBP8.17□□□□□ -1.1
UPF2-203ENST00000397053 TICAM2Q86XR7 235 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 ANAPC4Q9UJX5 808 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 ATP6V0A2Q9Y487 856 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 TTC21BQ7Z4L5 1316 aa8.17□□□□□ -1.1
UPF2-203ENST00000397053 GRIN2BQ13224 1484 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 NOP56O00567 594 aaKnown RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 GSDMDP57764 484 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 CCDC50Q8IVM0 306 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 XAGE3Q8WTP9 111 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 BRF1Q92994 677 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 RRP36Q96EU6 259 aaKnown RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 SELENOOQ9BVL4 669 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 SPC25Q9HBM1 224 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 HMG20BQ9P0W2 317 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 CALML3P27482 149 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 LMBR1LQ6UX01 489 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 COPS6Q7L5N1 327 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 PROCA1Q8NCQ7 364 aaPredicted RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 CUX1P39880 1505 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 GMNNO75496 209 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 LDHBP07195 334 aaKnown RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 RASA3Q14644 834 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 TRAPPC3LQ5T215 181 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 CTR9Q6PD62 1173 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 HOOK2Q96ED9 719 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 CGNQ9P2M7 1197 aaKnown RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 RASAL2Q9UJF2 1139 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 ABCC11Q96J66 1382 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 STX10O60499 249 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 SYKP43405 635 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 TPD52P55327 224 aaPredicted RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 ARID5AQ03989 594 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 GEN1Q17RS7 908 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 INF2Q27J81 1249 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 LARGE2Q8N3Y3 721 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 CCT6BQ92526 530 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 FNBP1Q96RU3 617 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 ALG1Q9BT22 464 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 PRKG1Q13976 671 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 RAB3GAP1Q15042 981 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 GSDMBQ8TAX9 411 aa8.16□□□□□ -1.1
UPF2-203ENST00000397053 SMCR8Q8TEV9 937 aaPredicted RBP8.16□□□□□ -1.1
UPF2-203ENST00000397053 POTEB2H3BUK9 544 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 GNA11P29992 359 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 ZNF165P49910 485 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 STX1AQ16623 288 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 KIFC2Q96AC6 838 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 PKD2L1Q9P0L9 805 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 MAGEB6P1A0A0J9YX57 407 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 M0QZ92 97 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 GNPATO15228 680 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 NEMFO60524 1076 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 ANKRD2Q9GZV1 360 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 MKRN1Q9UHC7 482 aaKnown RBP8.15□□□□□ -1.1
UPF2-203ENST00000397053 PTPRCP08575 1304 aa8.15□□□□□ -1.1
UPF2-203ENST00000397053 IL15P40933 162 aaPredicted RBP8.15□□□□□ -1.11
UPF2-203ENST00000397053 SLC39A6Q13433 755 aa8.15□□□□□ -1.11
UPF2-203ENST00000397053 CCDC89Q8N998 374 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms