RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NRAPQ86VF7 1730 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 SH3TC1Q8TE82 1336 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 STX6O43752 255 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 GPTP24298 496 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 PRIM1P49642 420 aaKnown RBP16.68■□□□□ 0.26
SNCA-204ENST00000394989 TOB2Q14106 344 aaPredicted RBP16.68■□□□□ 0.26
SNCA-204ENST00000394989 NECAB1Q8N987 351 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 GDPD2Q9HCC8 539 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 GJB2P29033 226 aa16.67■□□□□ 0.26
SNCA-204ENST00000394989 BLOC1S2Q6QNY1 142 aa16.67■□□□□ 0.26
SNCA-204ENST00000394989 NUP98P52948 1817 aa16.67■□□□□ 0.26
SNCA-204ENST00000394989 RRP9O43818 475 aaKnown RBP16.67■□□□□ 0.26
SNCA-204ENST00000394989 ZSCAN22P10073 491 aaPredicted RBP16.67■□□□□ 0.26
SNCA-204ENST00000394989 CYP21A2P08686 494 aa16.67■□□□□ 0.26
SNCA-204ENST00000394989 ALDH8A1Q9H2A2 487 aaPredicted RBP16.67■□□□□ 0.26
SNCA-204ENST00000394989 LTBP4Q8N2S1 1624 aa16.66■□□□□ 0.26
SNCA-204ENST00000394989 CDHR2Q9BYE9 1310 aa16.66■□□□□ 0.26
SNCA-204ENST00000394989 ADORA1P30542 326 aa16.66■□□□□ 0.26
SNCA-204ENST00000394989 CEP126Q9P2H0 1117 aa16.66■□□□□ 0.26
SNCA-204ENST00000394989 SPEF2Q9C093 1822 aa16.66■□□□□ 0.26
SNCA-204ENST00000394989 RIC1Q4ADV7 1423 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 IFIT1P09914 478 aaKnown RBP16.65■□□□□ 0.26
SNCA-204ENST00000394989 SLIT2O94813 1529 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 SPATA31A1Q5TZJ5 1347 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 GADD45BO75293 160 aaPredicted RBP16.65■□□□□ 0.26
SNCA-204ENST00000394989 ADAMTS2O95450 1211 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 TTLL11Q8NHH1 800 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 FBXO3Q9UK99 471 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 USP48Q86UV5 1035 aa16.65■□□□□ 0.26
SNCA-204ENST00000394989 MYH3P11055 1940 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 IFIT5Q13325 482 aaKnown RBP16.64■□□□□ 0.25
SNCA-204ENST00000394989 ZMYM1Q5SVZ6 1142 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 XAGE2Q96GT9 111 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 GREM2Q9H772 168 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 U3KPZ7 1027 aaPredicted RBP16.64■□□□□ 0.25
SNCA-204ENST00000394989 F13A1P00488 732 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.64■□□□□ 0.25
SNCA-204ENST00000394989 HELLSQ9NRZ9 838 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 TBC1D2BQ9UPU7 963 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 MTMR6Q9Y217 621 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 UBN2Q6ZU65 1347 aa16.64■□□□□ 0.25
SNCA-204ENST00000394989 PHLPP1O60346 1717 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 CNPY2Q9Y2B0 182 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 LAMA4Q16363 1823 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 MBD3O95983 291 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 SCARF1Q14162 830 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 STOX1Q6ZVD7 989 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 RIPOR2Q9Y4F9 1068 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 TMEM87AQ8NBN3 555 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 NEK1Q96PY6 1258 aa16.63■□□□□ 0.25
SNCA-204ENST00000394989 MAST3O60307 1309 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 A0A0G2JLW4 131 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 ITGA6P23229 1130 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 IL6STP40189 918 aaPredicted RBP16.62■□□□□ 0.25
SNCA-204ENST00000394989 CTSWP56202 376 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 KRT32Q14532 448 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 ANKRD1Q15327 319 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 HSP90AB3PQ58FF7 597 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 TICAM2Q86XR7 235 aa16.62■□□□□ 0.25
SNCA-204ENST00000394989 DZIP3Q86Y13 1208 aaKnown RBP16.62■□□□□ 0.25
SNCA-204ENST00000394989 AKAP2Q9Y2D5 859 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 SYCE3A1L190 88 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 IRS4O14654 1257 aaPredicted RBP16.61■□□□□ 0.25
SNCA-204ENST00000394989 RNF113AO15541 343 aaKnown RBP16.61■□□□□ 0.25
SNCA-204ENST00000394989 FKBP4Q02790 459 aaKnown RBP eCLIP16.61■□□□□ 0.25
SNCA-204ENST00000394989 DDB1Q16531 1140 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 TAF7LQ5H9L4 462 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 ERVV-1B6SEH8 477 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 M0R2C6 588 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 MARCH10Q8NA82 808 aaPredicted RBP16.61■□□□□ 0.25
SNCA-204ENST00000394989 DSCC1Q9BVC3 393 aa16.61■□□□□ 0.25
SNCA-204ENST00000394989 TRMT112Q9UI30 125 aaKnown RBP16.61■□□□□ 0.25
SNCA-204ENST00000394989 HSPD1P10809 573 aaKnown RBP16.6■□□□□ 0.25
SNCA-204ENST00000394989 NASPP49321 788 aaPredicted RBP16.6■□□□□ 0.25
SNCA-204ENST00000394989 CCDC158Q5M9N0 1113 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 INTS5Q6P9B9 1019 aaKnown RBP16.6■□□□□ 0.25
SNCA-204ENST00000394989 PI16Q6UXB8 463 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 ZNF34Q8IZ26 560 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 ACSBG1Q96GR2 724 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 RBSNQ9H1K0 784 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 TTC39AQ5SRH9 613 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 LDHAL6AQ6ZMR3 332 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 VGLL2Q8N8G2 317 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 OSBP2Q969R2 916 aa16.6■□□□□ 0.25
SNCA-204ENST00000394989 THRAP3Q9Y2W1 955 aaKnown RBP16.6■□□□□ 0.25
SNCA-204ENST00000394989 EIF5P55010 431 aaKnown RBP16.59■□□□□ 0.25
SNCA-204ENST00000394989 STK3Q13188 491 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 CDCA7Q9BWT1 371 aaPredicted RBP16.59■□□□□ 0.25
SNCA-204ENST00000394989 FAM13BQ9NYF5 915 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 FOXP2O15409 715 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 LRSAM1Q6UWE0 723 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 Q6ZUG5 572 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 AKAP11Q9UKA4 1901 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 GORABQ5T7V8 394 aa16.59■□□□□ 0.25
SNCA-204ENST00000394989 NWD2Q9ULI1 1742 aa16.58■□□□□ 0.25
SNCA-204ENST00000394989 ZAP70P43403 619 aa16.58■□□□□ 0.24
SNCA-204ENST00000394989 METTL24Q5JXM2 366 aa16.58■□□□□ 0.24
SNCA-204ENST00000394989 LRRC2Q9BYS8 371 aa16.58■□□□□ 0.24
SNCA-204ENST00000394989 SPATA31A5Q5VU36 1347 aa16.58■□□□□ 0.24
SNCA-204ENST00000394989 SPATA31A7Q8IWB4 1347 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms