RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 MCMDC2Q4G0Z9 681 aa13.24□□□□□ -0.29
SMAD9-202ENST00000379826 A0A087WWV3 80 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 SLC3A2P08195 630 aaKnown RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 AKAP4Q5JQC9 854 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 CCDC57Q2TAC2 916 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 ZSCAN25Q6NSZ9 544 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 TLR7Q9NYK1 1049 aaKnown RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 ABCA9Q8IUA7 1624 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 NPHP3Q7Z494 1330 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 CBFA2T2O43439 604 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 NEMFO60524 1076 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 CNNM1Q9NRU3 951 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 DEPDC5O75140 1603 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 PPLO60437 1756 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 MARCKSP29966 332 aaPredicted RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 PI4K2BQ8TCG2 481 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 LMTK2Q8IWU2 1503 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 A0A1B0GVL5 298 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 EIF4A1P60842 406 aaKnown RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 PCMTD1Q96MG8 357 aaPredicted RBP13.23□□□□□ -0.29
SMAD9-202ENST00000379826 IL25Q9H293 177 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 ZSWIM6Q9HCJ5 1215 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 USP16Q9Y5T5 823 aa13.23□□□□□ -0.29
SMAD9-202ENST00000379826 NUP133Q8WUM0 1156 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 BEND3Q5T5X7 828 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 CCDC82Q8N4S0 544 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 GTPBP4Q9BZE4 634 aaKnown RBP13.22□□□□□ -0.29
SMAD9-202ENST00000379826 ZPR1O75312 459 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 TMCO3Q6UWJ1 677 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 ATP10DQ9P241 1426 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 RAD21O60216 631 aa13.22□□□□□ -0.29
SMAD9-202ENST00000379826 CASQ1P31415 396 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 SYT10Q6XYQ8 523 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 ZBTB3Q9H5J0 574 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 RPAP1Q9BWH6 1393 aaPredicted RBP13.21□□□□□ -0.29
SMAD9-202ENST00000379826 KIDINS220Q9ULH0 1771 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
SMAD9-202ENST00000379826 IDH1O75874 414 aaKnown RBP13.21□□□□□ -0.29
SMAD9-202ENST00000379826 GSDMDP57764 484 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 NBPF6Q5VWK0 638 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 OTUD7BQ6GQQ9 843 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 NBPF4Q96M43 638 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 CEP126Q9P2H0 1117 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 TOP1P11387 765 aaKnown RBP13.21□□□□□ -0.29
SMAD9-202ENST00000379826 BICDL1Q6ZP65 573 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 JMYQ8N9B5 988 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 OGFRQ9NZT2 677 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
SMAD9-202ENST00000379826 USP32Q8NFA0 1604 aa13.21□□□□□ -0.29
SMAD9-202ENST00000379826 ANKRD13DQ6ZTN6 518 aa13.21□□□□□ -0.3
SMAD9-202ENST00000379826 KRT222Q8N1A0 295 aa13.21□□□□□ -0.3
SMAD9-202ENST00000379826 MRPS27Q92552 414 aaKnown RBP13.21□□□□□ -0.3
SMAD9-202ENST00000379826 IFNKQ9P0W0 207 aa13.21□□□□□ -0.3
SMAD9-202ENST00000379826 CTNNA3Q9UI47 895 aa13.21□□□□□ -0.3
SMAD9-202ENST00000379826 PRAMEF22A3QJZ6 481 aa13.21□□□□□ -0.3
SMAD9-202ENST00000379826 SEC62Q99442 399 aaKnown RBP13.21□□□□□ -0.3
SMAD9-202ENST00000379826 QTRT2Q9H974 415 aaKnown RBP13.21□□□□□ -0.3
SMAD9-202ENST00000379826 ORC3Q9UBD5 711 aaPredicted RBP13.21□□□□□ -0.3
SMAD9-202ENST00000379826 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 ROBO2Q9HCK4 1378 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 KLF18A0A0U1RQI7 1052 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 PROSER3Q2NL68 480 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 TSR1Q2NL82 804 aaKnown RBP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 DNAI1Q9UI46 699 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 ARHGEF28Q8N1W1 1705 aaKnown RBP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 LMOD1P29536 600 aaPredicted RBP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 LINS1Q8NG48 757 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 CPLX3Q8WVH0 158 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 TBC1D2BQ9UPU7 963 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 MTMR7Q9Y216 660 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 GTF2F1P35269 517 aaKnown RBP eCLIP13.2□□□□□ -0.37e-6■■■■□ 21.3
SMAD9-202ENST00000379826 ELF2Q15723 593 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 EAF2Q96CJ1 260 aaPredicted RBP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 ZFP91Q96JP5 570 aaPredicted RBP13.2□□□□□ -0.3
SMAD9-202ENST00000379826 WWC3Q9ULE0 1092 aa13.2□□□□□ -0.3
SMAD9-202ENST00000379826 ZSWIM4Q9H7M6 989 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 LMBR1LQ6UX01 489 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 PIK3C2BO00750 1634 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 KIF2AO00139 706 aaPredicted RBP13.19□□□□□ -0.3
SMAD9-202ENST00000379826 RXRAP19793 462 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 PAG1Q9NWQ8 432 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 KLHL10Q6JEL2 608 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 KIF6Q6ZMV9 814 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 FBXO41Q8TF61 875 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 TFCP2L1Q9NZI6 479 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 VWDEQ8N2E2 1590 aa13.19□□□□□ -0.3
SMAD9-202ENST00000379826 ZNF213O14771 459 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.18□□□□□ -0.3
SMAD9-202ENST00000379826 ZNF589Q86UQ0 364 aaPredicted RBP13.18□□□□□ -0.3
SMAD9-202ENST00000379826 GTF3C6Q969F1 213 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 DBNDD2Q9BQY9 259 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 PPFIBP1Q86W92 1011 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 NFATC2IPQ8NCF5 419 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 CNNM3Q8NE01 707 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 ZNF397Q8NF99 534 aaPredicted RBP13.18□□□□□ -0.3
SMAD9-202ENST00000379826 FTOQ9C0B1 505 aaKnown RBP eCLIP13.18□□□□□ -0.3
SMAD9-202ENST00000379826 SLU7O95391 586 aaKnown RBP13.18□□□□□ -0.3
SMAD9-202ENST00000379826 CCDC150Q8NCX0 1101 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 NEO1Q92859 1461 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms