RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 FAM169AQ9Y6X4 670 aa13.45□□□□□ -0.26
NPHP4-202ENST00000378161 CSB-PGBD3P0DP91 1061 aa13.45□□□□□ -0.26
NPHP4-202ENST00000378161 FILIP1LQ4L180 1135 aa13.45□□□□□ -0.26
NPHP4-202ENST00000378161 CAPRIN2Q6IMN6 1127 aaKnown RBP13.45□□□□□ -0.26
NPHP4-202ENST00000378161 BCAS4Q8TDM0 211 aa13.45□□□□□ -0.26
NPHP4-202ENST00000378161 ARHGAP45Q92619 1136 aa13.45□□□□□ -0.26
NPHP4-202ENST00000378161 ORC3Q9UBD5 711 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-202ENST00000378161 CEP104O60308 925 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 PSMA5P28066 241 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 YIPF3Q9GZM5 350 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 KDM6BO15054 1643 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 SCRN1Q12765 414 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 TMC6Q7Z403 805 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 MYLK4Q86YV6 388 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-202ENST00000378161 TSC22D3Q99576 134 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 CARD14Q9BXL6 1004 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 BICC1Q9H694 974 aaKnown RBP13.44□□□□□ -0.26
NPHP4-202ENST00000378161 PLCH2O75038 1416 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 A6NNZ2 444 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 PPFIA2O75334 1257 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 LONRF2Q1L5Z9 754 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 TUBB8Q3ZCM7 444 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 SLC30A9Q6PML9 568 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC12Q8WUD4 166 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-202ENST00000378161 ADGRL1O94910 1474 aa13.44□□□□□ -0.26
NPHP4-202ENST00000378161 ATP2C2O75185 946 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC92Q53HC0 331 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-202ENST00000378161 ATRIPQ8WXE1 791 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 RABEP2Q9H5N1 569 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 CNPY2Q9Y2B0 182 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 TPP2P29144 1249 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-202ENST00000378161 TMX3Q96JJ7 454 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 BATF3Q9NR55 127 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 CREB3O43889 395 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 THOC1Q96FV9 657 aaKnown RBP13.43□□□□□ -0.26
NPHP4-202ENST00000378161 FAM204AQ9H8W3 233 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 RIPOR2Q9Y4F9 1068 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 FHOD1Q9Y613 1164 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 CC2D2BQ6DHV5 1058 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 KDM4CQ9H3R0 1056 aa13.43□□□□□ -0.26
NPHP4-202ENST00000378161 PTPRCP08575 1304 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 CBFA2T2O43439 604 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 GADD45BO75293 160 aaPredicted RBP13.42□□□□□ -0.26
NPHP4-202ENST00000378161 PKP1Q13835 747 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 ACBD5Q5T8D3 534 aaPredicted RBP13.42□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC26Q8TAB7 109 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 OSBPL9Q96SU4 736 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 HYPKQ9NX55 129 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC61Q9Y6R9 512 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 DESP17661 470 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 PDE6BP35913 854 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC38Q502W7 563 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 TNNQ9UQP3 1299 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 KIF5CO60282 957 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 SERPINC1P01008 464 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 LAMB3Q13751 1172 aa13.42□□□□□ -0.26
NPHP4-202ENST00000378161 MYBL2P10244 700 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 TXNDC2Q86VQ3 553 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC148Q8NFR7 591 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 ANO10Q9NW15 660 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 KDM5CP41229 1560 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 PFDN1O60925 122 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 MXRA7P84157 204 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 ACTN3Q08043 901 aaPredicted RBP13.41□□□□□ -0.26
NPHP4-202ENST00000378161 RRS1Q15050 365 aaKnown RBP13.41□□□□□ -0.26
NPHP4-202ENST00000378161 BAG1Q99933 345 aaPredicted RBP13.41□□□□□ -0.26
NPHP4-202ENST00000378161 BAIAP2L1Q9UHR4 511 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 KDM5BQ9UGL1 1544 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 NLRP6P59044 892 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 HDGFL1Q5TGJ6 251 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 LMNTD2Q8IXW0 634 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 SPATA32Q96LK8 384 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 HIP1O00291 1037 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 CC2D1AQ6P1N0 951 aaPredicted RBP13.41□□□□□ -0.26
NPHP4-202ENST00000378161 IQUBQ8NA54 791 aa13.41□□□□□ -0.26
NPHP4-202ENST00000378161 CACTINQ8WUQ7 758 aaKnown RBP13.41□□□□□ -0.26
NPHP4-202ENST00000378161 GOLGA6CA6NDK9 693 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 EPB41L2O43491 1005 aaKnown RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 ZEB2O60315 1214 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 GOLGA6DP0CG33 693 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 ETF1P62495 437 aaKnown RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 MTA1Q13330 715 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 SETDB1Q15047 1291 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 SDCCAG8Q86SQ7 713 aaPredicted RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 KCNF1Q9H3M0 494 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 GOLGA6AQ9NYA3 693 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 NSFL1CQ9UNZ2 370 aaKnown RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 CD109Q6YHK3 1445 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 LRRD1A4D1F6 860 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 LRRC8AQ8IWT6 810 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 ZMAT2Q96NC0 199 aaKnown RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 CCDC151A5D8V7 595 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 SESN3P58005 492 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 APOBRQ0VD83 1088 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 DNAJC25Q9H1X3 360 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 ZSCAN16Q9H4T2 348 aaPredicted RBP13.4□□□□□ -0.26
NPHP4-202ENST00000378161 NRBP1Q9UHY1 535 aa13.4□□□□□ -0.26
NPHP4-202ENST00000378161 OPA1O60313 960 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 TXLNAP40222 546 aa13.39□□□□□ -0.27
NPHP4-202ENST00000378161 TCP11Q8WWU5 503 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms