RNA–Protein interactions for RNA: ENST00000372190.7

RAPGEF1-202, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,045 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-202ENST00000372190 BAG6P46379 1132 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 ME1P48163 572 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 TTF1Q15361 905 aaPredicted RBP16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 DBN1Q16643 649 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 HLA-DOAP06340 250 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 CHMP4BP1P59074 171 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 JDP2Q8WYK2 163 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 SMC6Q96SB8 1091 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 YEATS2Q9ULM3 1422 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 ANAPC15P60006 121 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 GSTO1P78417 241 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 CEP128Q6ZU80 1094 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 SPATA32Q96LK8 384 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 CABP5Q9NP86 173 aa16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 ZBTB12Q9Y330 459 aaPredicted RBP16.09■□□□□ 0.17
RAPGEF1-202ENST00000372190 COPS6Q7L5N1 327 aa16.08■□□□□ 0.17
RAPGEF1-202ENST00000372190 OGFOD1Q8N543 542 aa16.08■□□□□ 0.17
RAPGEF1-202ENST00000372190 ASXL1Q8IXJ9 1541 aa16.08■□□□□ 0.17
RAPGEF1-202ENST00000372190 RARSP54136 660 aaKnown RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZSCAN31Q96LW9 406 aaPredicted RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 JAKMIP1Q96N16 626 aaKnown RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 HOMER2Q9NSB8 354 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 MYO5CQ9NQX4 1742 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 SMARCA5O60264 1052 aaPredicted RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 LACTBP83111 547 aaPredicted RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 TNIP1Q15025 636 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 CCDC178Q5BJE1 867 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 TSPYL2Q9H2G4 693 aaPredicted RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 EIF5P55010 431 aaKnown RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 CCDC50Q8IVM0 306 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 PDRG1Q9NUG6 133 aa16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 U3KPZ7 1027 aaPredicted RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 NKTRP30414 1462 aaKnown RBP16.08■□□□□ 0.16
RAPGEF1-202ENST00000372190 WHAMMP3Q1A5X7 153 aa16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 RANBP6O60518 1105 aaKnown RBP16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 APBA3O96018 575 aa16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 CFAP100Q494V2 611 aa16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 WASF1Q92558 559 aa16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 HLTFQ14527 1009 aaKnown RBP eCLIP16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 MTHFSDQ2M296 383 aaKnown RBP16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 ATRIPQ8WXE1 791 aa16.07■□□□□ 0.16
RAPGEF1-202ENST00000372190 SYCE3A1L190 88 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 CACNA2D3Q8IZS8 1091 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 C16orf45Q96MC5 204 aaPredicted RBP16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 SETDB1Q15047 1291 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 RPAINQ86UA6 219 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 VCXQ9H320 206 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 POLKQ9UBT6 870 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 OPA1O60313 960 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 TPD52P55327 224 aaPredicted RBP16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 KLHL10Q6JEL2 608 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZNF804AQ7Z570 1209 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 MAP3K11Q16584 847 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 MAP3K5Q99683 1374 aa16.06■□□□□ 0.16
RAPGEF1-202ENST00000372190 PCK1P35558 622 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 NBPF11Q86T75 865 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 ARFGAP3Q9NP61 516 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 LMOD1P29536 600 aaPredicted RBP16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 CUL5Q93034 780 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 SEPT10Q9P0V9 454 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 F8W031 263 aaPredicted RBP16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 CLCN1P35523 988 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 RBBP5Q15291 538 aaKnown RBP16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZNF365Q70YC5 407 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 USO1O60763 962 aaKnown RBP16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 GCKP35557 465 aa16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 MATR3P43243 847 aaKnown RBP eCLIP16.05■□□□□ 0.16
RAPGEF1-202ENST00000372190 IQCA1Q86XH1 822 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 CCDC171Q6TFL3 1326 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 RAB3IL1Q8TBN0 382 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 RBM17Q96I25 401 aaKnown RBP16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 RNF41Q9H4P4 317 aaPredicted RBP16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 A0A1W2PP64 1363 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 UQCRFS1P1P0C7P4 283 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 EYA1Q99502 592 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 VCX3BQ9H321 246 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZGPATQ8N5A5 531 aaKnown RBP16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 IL16Q14005 1332 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 MAP3K9P80192 1104 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 CCDC155Q8N6L0 562 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 TTC14Q96N46 770 aa16.04■□□□□ 0.16
RAPGEF1-202ENST00000372190 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 MIER3Q7Z3K6 550 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.03■□□□□ 0.162e-6■□□□□ 9
RAPGEF1-202ENST00000372190 MKRN1Q9UHC7 482 aaKnown RBP16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 CEP135Q66GS9 1140 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 RNMTO43148 476 aaKnown RBP16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 GSDMDP57764 484 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 CCDC110Q8TBZ0 833 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 DDX12PQ92771 950 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 USH1CQ9Y6N9 552 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 SSBP05455 408 aaKnown RBP eCLIP16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZC4H2Q9NQZ6 224 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 NPHP4O75161 1426 aaPredicted RBP16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 SEPT8Q92599 483 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 CLIP2Q9UDT6 1046 aa16.03■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZFYVE9O95405 1425 aa16.02■□□□□ 0.16
RAPGEF1-202ENST00000372190 ZNF213O14771 459 aa16.02■□□□□ 0.16
RAPGEF1-202ENST00000372190 LTKP29376 864 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms