RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 MIPOL1Q8TD10 442 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 SSH1Q8WYL5 1049 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 INTS4Q96HW7 963 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 U2AF2P26368 475 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 SPECC1Q5M775 1068 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 ZNF444Q8N0Y2 327 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 AFAP1Q8N556 730 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 MKNK2Q9HBH9 465 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 CFAP57Q96MR6 1250 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 NDC80O14777 642 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 MYO1BO43795 1136 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ALDH1L1O75891 902 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 CALM1P0DP23 149 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 CALM2P0DP24 149 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 CALM3P0DP25 149 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ACTN2P35609 894 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 USP5P45974 858 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 CLUL1Q15846 466 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ANKS4BQ8N8V4 417 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 TBC1D5Q92609 795 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 CEP63Q96MT8 703 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 TDRD12Q587J7 1177 aaKnown RBP10.16□□□□□ -0.78
SYNE1-209ENST00000367257 EBAG9O00559 213 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 KIF4AO95239 1232 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ATP2B2Q01814 1243 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ZGPATQ8N5A5 531 aaKnown RBP10.16□□□□□ -0.78
SYNE1-209ENST00000367257 MTMR7Q9Y216 660 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ZNF518AQ6AHZ1 1483 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 ATP2A1O14983 1001 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 MATR3P43243 847 aaKnown RBP eCLIP10.16□□□□□ -0.78
SYNE1-209ENST00000367257 NLRP5P59047 1200 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 TMC6Q7Z403 805 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 NEK1Q96PY6 1258 aa10.16□□□□□ -0.78
SYNE1-209ENST00000367257 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-209ENST00000367257 COL17A1Q9UMD9 1497 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-209ENST00000367257 TTC41PQ6P2S7 1318 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 TACC1O75410 805 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 BAG3O95817 575 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 POLR3DP05423 398 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-209ENST00000367257 GJB2P29033 226 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 CCDC40Q4G0X9 1142 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 IL1RAPL2Q9NP60 686 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 SPATS2LQ9NUQ6 558 aaKnown RBP10.15□□□□□ -0.78
SYNE1-209ENST00000367257 FBXO3Q9UK99 471 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 NUCB1Q02818 461 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 PPP2R5AQ15172 486 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 KIAA0753Q2KHM9 967 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 DZIP1Q86YF9 867 aaKnown RBP10.15□□□□□ -0.78
SYNE1-209ENST00000367257 JAKMIP2Q96AA8 810 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 TSGA10Q9BZW7 698 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 SYCP2Q9BX26 1530 aa10.15□□□□□ -0.78
SYNE1-209ENST00000367257 CDC5LQ99459 802 aaKnown RBP10.15□□□□□ -0.78
SYNE1-209ENST00000367257 BICDL2A1A5D9 508 aa10.15□□□□□ -0.79
SYNE1-209ENST00000367257 IFIT3O14879 490 aaKnown RBP10.15□□□□□ -0.79
SYNE1-209ENST00000367257 SLU7O95391 586 aaKnown RBP10.15□□□□□ -0.79
SYNE1-209ENST00000367257 IKBKGQ9Y6K9 419 aa10.15□□□□□ -0.79
SYNE1-209ENST00000367257 ABCC5O15440 1437 aa10.15□□□□□ -0.79
SYNE1-209ENST00000367257 ZC3H13Q5T200 1668 aaKnown RBP10.15□□□□□ -0.79
SYNE1-209ENST00000367257 SSFA2P28290 1259 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 UBA7P41226 1012 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 TRIM14Q14142 442 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 KIAA1524Q8TCG1 905 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 GOLGA1Q92805 767 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 FERMT2Q96AC1 680 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 IQCDQ96DY2 449 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 STK24Q9Y6E0 443 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 HECW2Q9P2P5 1572 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 GCKP35557 465 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 NUTM1Q86Y26 1132 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 MRPS27Q92552 414 aaKnown RBP10.14□□□□□ -0.79
SYNE1-209ENST00000367257 PRDM11Q9NQV5 511 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 ZMYM3Q14202 1370 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 SEPT6Q14141 434 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 HLTFQ14527 1009 aaKnown RBP eCLIP10.14□□□□□ -0.79
SYNE1-209ENST00000367257 SAMD1Q6SPF0 538 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-209ENST00000367257 DDX46Q7L014 1031 aaKnown RBP10.14□□□□□ -0.79
SYNE1-209ENST00000367257 EXOC6BQ9Y2D4 811 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 GNAT2P19087 354 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 CTNNA2P26232 953 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 CAMK4Q16566 473 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 ZSCAN23Q3MJ62 389 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 TBC1D9Q6ZT07 1266 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 BRAPQ7Z569 592 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 TCHPQ9BT92 498 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 EXOC1Q9NV70 894 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 MROH2AA6NES4 1674 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 E9PCH4 1651 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 RTL9Q8NET4 1388 aa10.14□□□□□ -0.79
SYNE1-209ENST00000367257 KRT86O43790 486 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 NBPF11Q86T75 865 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 ASXL1Q8IXJ9 1541 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 PSMA7O14818 248 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 CALML3P27482 149 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 METAP2P50579 478 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC129Q6ZRS4 1044 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 SEPT14Q6ZU15 432 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 POTEDQ86YR6 584 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 TMOD3Q9NYL9 352 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 NEO1Q92859 1461 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms