RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CCDC77Q9BR77 488 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC96Q2M329 555 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SAMD1Q6SPF0 538 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 LMNTD2Q8IXW0 634 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 EXOC4Q96A65 974 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 A0A1B0GW55 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L2P0CJ85 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L3P0CJ86 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L4P0CJ87 422 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L5P0CJ88 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L6P0CJ89 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4L7P0CJ90 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 MAP7D1Q3KQU3 841 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DUX4Q9UBX2 424 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SCRIBQ14160 1630 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 EFCAB2Q5VUJ9 269 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 DNAI1Q9UI46 699 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 LMNAP02545 664 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 AKAP2Q9Y2D5 859 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 TACC1O75410 805 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 FAM76AQ8TAV0 307 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC84Q86UT8 332 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 RRAGDQ9NQL2 400 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SMARCA5O60264 1052 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SLC3A2P08195 630 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 EVCP57679 992 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SMARCC2Q8TAQ2 1214 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 FGD5Q6ZNL6 1462 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 PLEKHA4Q9H4M7 779 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 MKRN3Q13064 507 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 SMAPO00193 183 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 VPS37CA5D8V6 355 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 TMTC2Q8N394 836 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 PPFIBP2Q8ND30 876 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 MORC1Q86VD1 984 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 TNNQ9UQP3 1299 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 ADKP55263 362 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 ZMAT2Q96NC0 199 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 ASXL1Q8IXJ9 1541 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 STX1AQ16623 288 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 FAM43BQ6ZT52 329 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 KRT23Q9C075 422 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 WASLO00401 505 aaPredicted RBP4.28□□□□□ -1.73
SYNE1-207ENST00000367255 RNF8O76064 485 aa4.28□□□□□ -1.73
SYNE1-207ENST00000367255 TTF2Q9UNY4 1162 aaKnown RBP4.28□□□□□ -1.73
SYNE1-207ENST00000367255 GLE1Q53GS7 698 aaKnown RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 C16orf71Q8IYS4 520 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ATP2A1O14983 1001 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 SEC24BO95487 1268 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 IGHDP01880 384 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ZFXP17010 805 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ZSCAN25Q6NSZ9 544 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 FSD1Q9BTV5 496 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 MRPL40Q9NQ50 206 aaKnown RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 WDR91A4D1P6 747 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 HSPA6P17066 643 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 CDC25BP30305 580 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ARHGAP29Q52LW3 1261 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 PARP2Q9UGN5 583 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ERICH2A1L162 156 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 MECOMQ03112 1051 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TTC1Q99614 292 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TBC1D2BQ9UPU7 963 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 POLR3AO14802 1390 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 CETN1Q12798 172 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 KDRP35968 1356 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TTC36A6NLP5 189 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 ATL2Q8NHH9 583 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 CCDC12Q8WUD4 166 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 STAG1Q8WVM7 1258 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 VIPAS39Q9H9C1 493 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TSPY2A6NKD2 308 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TSPY3P0CV98 308 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TSPY8P0CW00 308 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TSPY1Q01534 308 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 PDCD7Q8N8D1 485 aaKnown RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 KIF1BPQ96EK5 621 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 EFCAB8A8MWE9 144 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 MAP3K11Q16584 847 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 WHAMMP3Q1A5X7 153 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 PAF1Q8N7H5 531 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 U2AF1L5P0DN76 240 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 U2AF1Q01081 240 aaKnown RBP eCLIP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 MUM1L1Q5H9M0 696 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 SART1O43290 800 aaKnown RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 OTUD6BQ8N6M0 293 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 PDZRN3Q9UPQ7 1066 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 MORC2Q9Y6X9 1032 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 POTEFA5A3E0 1075 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 POTEIP0CG38 1075 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 POTEJP0CG39 1038 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 RLBP1P12271 317 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 POTEEQ6S8J3 1075 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 OSBPL9Q96SU4 736 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 GSTA2P09210 222 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 TRIM55Q9BYV6 548 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 EDEM3Q9BZQ6 932 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 CACNA2D3Q8IZS8 1091 aa4.27□□□□□ -1.73
SYNE1-207ENST00000367255 GPR161Q8N6U8 529 aaKnown RBP4.27□□□□□ -1.73
SYNE1-207ENST00000367255 PFDN4Q9NQP4 134 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms