RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DDX19AQ9NUU7 478 aaKnown RBP14.3□□□□□ -0.12
CLIP3-201ENST00000360535 TPD52L1Q16890 204 aaPredicted RBP14.29□□□□□ -0.12
CLIP3-201ENST00000360535 MCMDC2Q4G0Z9 681 aa14.29□□□□□ -0.12
CLIP3-201ENST00000360535 CCAR1Q8IX12 1150 aaKnown RBP14.29□□□□□ -0.12
CLIP3-201ENST00000360535 CLSTN2Q9H4D0 955 aa14.29□□□□□ -0.12
CLIP3-201ENST00000360535 NPHP4O75161 1426 aaPredicted RBP14.29□□□□□ -0.12
CLIP3-201ENST00000360535 ME1P48163 572 aa14.29□□□□□ -0.12
CLIP3-201ENST00000360535 NAA30Q147X3 362 aaPredicted RBP14.29□□□□□ -0.12
CLIP3-201ENST00000360535 MTERF4Q7Z6M4 381 aaKnown RBP14.29□□□□□ -0.12
CLIP3-201ENST00000360535 SPTLC3Q9NUV7 552 aa14.29□□□□□ -0.12
CLIP3-201ENST00000360535 HMG20BQ9P0W2 317 aa14.29□□□□□ -0.12
CLIP3-201ENST00000360535 TATP17735 454 aaPredicted RBP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 FKBP4Q02790 459 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 STOX1Q6ZVD7 989 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 FMNL2Q96PY5 1086 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 SLC52A2Q9HAB3 445 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 ZNF75DP51815 510 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 KRT32Q14532 448 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 TRMT1Q9NXH9 659 aaKnown RBP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 TTLL5Q6EMB2 1281 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 C11orf57Q6ZUT1 292 aaPredicted RBP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 PDCL2Q8N4E4 241 aa14.28□□□□□ -0.12
CLIP3-201ENST00000360535 CCDC94Q9BW85 323 aaPredicted RBP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 GPHNQ9NQX3 736 aaPredicted RBP14.28□□□□□ -0.12
CLIP3-201ENST00000360535 MED23Q9ULK4 1368 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 TNNT1P13805 278 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 ATP5JP18859 108 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 CCDC144BQ3MJ40 725 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 CCDC144CPQ8IYA2 1237 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 ZBTB3Q9H5J0 574 aa14.27□□□□□ -0.12
CLIP3-201ENST00000360535 PTPDC1A2A3K4 754 aa14.27□□□□□ -0.13
CLIP3-201ENST00000360535 U2AF2P26368 475 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLIP3-201ENST00000360535 RESTQ13127 1097 aa14.27□□□□□ -0.13
CLIP3-201ENST00000360535 CACTINQ8WUQ7 758 aaKnown RBP14.27□□□□□ -0.13
CLIP3-201ENST00000360535 U3KPZ7 1027 aaPredicted RBP14.27□□□□□ -0.13
CLIP3-201ENST00000360535 ZNF609O15014 1411 aa14.27□□□□□ -0.13
CLIP3-201ENST00000360535 NPHP1O15259 732 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 POLR3DP05423 398 aaPredicted RBP14.26□□□□□ -0.13
CLIP3-201ENST00000360535 ISM2Q6H9L7 571 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 USP28Q96RU2 1077 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.26□□□□□ -0.13
CLIP3-201ENST00000360535 V9GYY5 206 aaPredicted RBP14.26□□□□□ -0.13
CLIP3-201ENST00000360535 KIF13AQ9H1H9 1805 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 TPM3P06753 285 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 ATP2B3Q16720 1220 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 ZSCAN25Q6NSZ9 544 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 CCDC73Q6ZRK6 1079 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 PROSER2Q86WR7 435 aaPredicted RBP14.26□□□□□ -0.13
CLIP3-201ENST00000360535 CFAP45Q9UL16 551 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 ELP1O95163 1332 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 CABP4P57796 275 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 WASHC4Q2M389 1173 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 GORABQ5T7V8 394 aa14.26□□□□□ -0.13
CLIP3-201ENST00000360535 SYTL4Q96C24 671 aaPredicted RBP14.26□□□□□ -0.13
CLIP3-201ENST00000360535 BIN1O00499 593 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 SNRPA1P09661 255 aaKnown RBP14.25□□□□□ -0.13
CLIP3-201ENST00000360535 SDF4Q9BRK5 362 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 GJB4Q9NTQ9 266 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 MARF1Q9Y4F3 1742 aaKnown RBP14.25□□□□□ -0.13
CLIP3-201ENST00000360535 KINO60870 393 aaKnown RBP14.25□□□□□ -0.13
CLIP3-201ENST00000360535 SF3A1Q15459 793 aaKnown RBP14.25□□□□□ -0.13
CLIP3-201ENST00000360535 FSIP1Q8NA03 581 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 COPRSQ9NQ92 184 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 ARHGAP23Q9P227 1491 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 LRRC24Q50LG9 513 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 GOLPH3LQ9H4A5 285 aa14.25□□□□□ -0.13
CLIP3-201ENST00000360535 PHKG2P15735 406 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 PAG1Q9NWQ8 432 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 UTYO14607 1347 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 A0A1B0GVL5 298 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 RFX5P48382 616 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-201ENST00000360535 TTLL7Q6ZT98 887 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 SLIT1O75093 1534 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 ERBB3P21860 1342 aa14.24□□□□□ -0.13
CLIP3-201ENST00000360535 IFIT1P09914 478 aaKnown RBP14.23□□□□□ -0.13
CLIP3-201ENST00000360535 ZRSR1Q15695 479 aaKnown RBP14.23□□□□□ -0.13
CLIP3-201ENST00000360535 DHX32Q7L7V1 743 aaKnown RBP14.23□□□□□ -0.13
CLIP3-201ENST00000360535 NSUN7Q8NE18 718 aaKnown RBP14.23□□□□□ -0.13
CLIP3-201ENST00000360535 KDM3BQ7LBC6 1761 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 IFNL2Q8IZJ0 200 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 KBTBD3Q8NAB2 608 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 HAUS7Q99871 368 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 PUS3Q9BZE2 481 aaKnown RBP14.23□□□□□ -0.13
CLIP3-201ENST00000360535 A1BGP04217 495 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 AOPEPQ8N6M6 819 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 NFAT5O94916 1531 aa14.23□□□□□ -0.13
CLIP3-201ENST00000360535 USP27XA6NNY8 438 aa14.22□□□□□ -0.13
CLIP3-201ENST00000360535 CTDNEP1O95476 244 aa14.22□□□□□ -0.13
CLIP3-201ENST00000360535 ZSCAN16Q9H4T2 348 aaPredicted RBP14.22□□□□□ -0.13
CLIP3-201ENST00000360535 KAT6BQ8WYB5 2073 aa14.22□□□□□ -0.13
CLIP3-201ENST00000360535 E7EWF7 191 aa14.22□□□□□ -0.13
CLIP3-201ENST00000360535 USPL1Q5W0Q7 1092 aa14.22□□□□□ -0.13
CLIP3-201ENST00000360535 TDRD7Q8NHU6 1098 aaKnown RBP14.22□□□□□ -0.13
CLIP3-201ENST00000360535 N4BP2Q86UW6 1770 aaPredicted RBP14.21□□□□□ -0.13
CLIP3-201ENST00000360535 CYP27B1O15528 508 aa14.21□□□□□ -0.13
CLIP3-201ENST00000360535 HSPD1P10809 573 aaKnown RBP14.21□□□□□ -0.13
CLIP3-201ENST00000360535 PLA2G4DQ86XP0 818 aa14.21□□□□□ -0.13
CLIP3-201ENST00000360535 HEG1Q9ULI3 1381 aa14.21□□□□□ -0.13
CLIP3-201ENST00000360535 STK11IPQ8N1F8 1099 aa14.21□□□□□ -0.13
CLIP3-201ENST00000360535 CCDC112Q8NEF3 446 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms