RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 KIF3CO14782 793 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 PPFIA4O75335 1185 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 LARGE1O95461 756 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 GJB2P29033 226 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 ARMCX5Q6P1M9 558 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 ZSWIM4Q9H7M6 989 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 CABP2Q9NPB3 220 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 TFIP11Q9UBB9 837 aaKnown RBP12.36□□□□□ -0.43
CAPN3-203ENST00000349748 GOLGA6L4A6NEF3 574 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 C21orf2O43822 256 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 EIF5P55010 431 aaKnown RBP12.36□□□□□ -0.43
CAPN3-203ENST00000349748 ATP2B2Q01814 1243 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 CLSTN2Q9H4D0 955 aa12.36□□□□□ -0.43
CAPN3-203ENST00000349748 CCDC9Q9Y3X0 531 aaKnown RBP12.36□□□□□ -0.43
CAPN3-203ENST00000349748 CPA1P15085 419 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 RBM5P52756 815 aaKnown RBP eCLIP12.35□□□□□ -0.43
CAPN3-203ENST00000349748 ANAPC15P60006 121 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 NBPF9Q3BBW0 867 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 TRIM65Q6PJ69 517 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 CCDC83Q8IWF9 413 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 BECN2A8MW95 431 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 AK2P54819 239 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 RUFY3Q7L099 469 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 NBPF11Q86T75 865 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 MRPL50Q8N5N7 158 aaKnown RBP12.35□□□□□ -0.43
CAPN3-203ENST00000349748 TSPYL6Q8N831 410 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 CTCFLQ8NI51 663 aaPredicted RBP12.35□□□□□ -0.43
CAPN3-203ENST00000349748 PLEKHF1Q96S99 279 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 CD248Q9HCU0 757 aa12.35□□□□□ -0.43
CAPN3-203ENST00000349748 PHLPP2Q6ZVD8 1323 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 TTC21BQ7Z4L5 1316 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 PSDA5PKW4 1024 aaPredicted RBP12.34□□□□□ -0.43
CAPN3-203ENST00000349748 SSR1P43307 286 aaKnown RBP12.34□□□□□ -0.43
CAPN3-203ENST00000349748 ERC1Q8IUD2 1116 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 CCDC102AQ96A19 550 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 IL25Q9H293 177 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 MSH6P52701 1360 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 USP8P40818 1118 aa12.34□□□□□ -0.43
CAPN3-203ENST00000349748 RBM43Q6ZSC3 357 aaKnown RBP12.34□□□□□ -0.43
CAPN3-203ENST00000349748 FRMD3A2A2Y4 597 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 GPTP24298 496 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 KRT85P78386 507 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 PPP2R3AQ06190 1150 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 TBC1D8BQ0IIM8 1120 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 VPS53Q5VIR6 699 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 RILPL2Q969X0 211 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 FAM204AQ9H8W3 233 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 VEZTQ9HBM0 779 aa12.33□□□□□ -0.43
CAPN3-203ENST00000349748 YTHDC2Q9H6S0 1430 aaKnown RBP12.33□□□□□ -0.44
CAPN3-203ENST00000349748 PDE6BP35913 854 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 CCNHP51946 323 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-203ENST00000349748 NEDD9Q14511 834 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 GGNBP2Q9H3C7 697 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 RABEP2Q9H5N1 569 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 AMOTL2Q9Y2J4 779 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 TTC41PQ6P2S7 1318 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 PDE1AP54750 535 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 GSDMDP57764 484 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 KRT24Q2M2I5 525 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 RSRC2Q7L4I2 434 aaKnown RBP12.33□□□□□ -0.44
CAPN3-203ENST00000349748 TMC6Q7Z403 805 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 BICD2Q8TD16 824 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 DDX19AQ9NUU7 478 aaKnown RBP12.33□□□□□ -0.44
CAPN3-203ENST00000349748 MCM8Q9UJA3 840 aa12.33□□□□□ -0.44
CAPN3-203ENST00000349748 CEP170BQ9Y4F5 1589 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-203ENST00000349748 ABCC4O15439 1325 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 SFPQP23246 707 aaKnown RBP eCLIP12.32□□□□□ -0.44
CAPN3-203ENST00000349748 PPP4R3CPQ6ZMV5 832 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 KIRREL3Q8IZU9 778 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 ALKQ9UM73 1620 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 EME2A4GXA9 379 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-203ENST00000349748 CAND2O75155 1236 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 CCT5P48643 541 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 ZC3H12AQ5D1E8 599 aaKnown RBP12.32□□□□□ -0.44
CAPN3-203ENST00000349748 FAM169AQ9Y6X4 670 aa12.32□□□□□ -0.44
CAPN3-203ENST00000349748 CCDC151A5D8V7 595 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 SKAP2O75563 359 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 BEND6Q5SZJ8 279 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 CDC37L1Q7L3B6 337 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 DHX40Q8IX18 779 aaKnown RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 TEX11Q8IYF3 940 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 ARHGEF28Q8N1W1 1705 aaKnown RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 OSBPL5Q9H0X9 879 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 LIMCH1Q9UPQ0 1083 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 A0A1W2PP64 1363 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 PIK3R4Q99570 1358 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 COL3A1P02461 1466 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 UBR1Q8IWV7 1749 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 MYO1FO00160 1098 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 SGSM2O43147 1006 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 CHMLP26374 656 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 SETQ01105 290 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 ZKSCAN8Q15776 578 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 NBPF5PQ86XG9 351 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 ERCC4Q92889 916 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-203ENST00000349748 WDR24Q96S15 920 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 IRAK4Q9NWZ3 460 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 EVC2Q86UK5 1308 aa12.31□□□□□ -0.44
CAPN3-203ENST00000349748 VAMP4O75379 141 aa12.3□□□□□ -0.44
CAPN3-203ENST00000349748 NF2P35240 595 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms