RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 BRF1Q92994 677 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.55■□□□□ 0.24
TRIM4-201ENST00000349062 USP54Q70EL1 1684 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 PHRF1Q9P1Y6 1649 aaKnown RBP16.55■□□□□ 0.24
TRIM4-201ENST00000349062 KLHL40Q2TBA0 621 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 RABL6Q3YEC7 729 aaPredicted RBP16.55■□□□□ 0.24
TRIM4-201ENST00000349062 MAP4K1Q92918 833 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 ZAP70P43403 619 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 DNM1Q05193 864 aaKnown RBP16.54■□□□□ 0.24
TRIM4-201ENST00000349062 TMEM63CQ9P1W3 806 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 BRD1O95696 1058 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 MCMDC2Q4G0Z9 681 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 JAK2O60674 1132 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 CUL4AQ13619 759 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 TTC14Q96N46 770 aa16.54■□□□□ 0.24
TRIM4-201ENST00000349062 WDR33Q9C0J8 1336 aaKnown RBP16.53■□□□□ 0.24
TRIM4-201ENST00000349062 CYP2E1P05181 493 aaPredicted RBP16.53■□□□□ 0.24
TRIM4-201ENST00000349062 PSMA5P28066 241 aa16.53■□□□□ 0.24
TRIM4-201ENST00000349062 Q6ZUG5 572 aa16.53■□□□□ 0.24
TRIM4-201ENST00000349062 CYP21A2P08686 494 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 NKX1-1Q15270 411 aaPredicted RBP16.52■□□□□ 0.24
TRIM4-201ENST00000349062 NEK1Q96PY6 1258 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 NCOA5Q9HCD5 579 aaKnown RBP16.52■□□□□ 0.24
TRIM4-201ENST00000349062 SEC31BQ9NQW1 1179 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 USP42Q9H9J4 1324 aaKnown RBP16.52■□□□□ 0.24
TRIM4-201ENST00000349062 SCN11AQ9UI33 1791 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 CYP19A1P11511 503 aaPredicted RBP16.52■□□□□ 0.24
TRIM4-201ENST00000349062 ATP2B3Q16720 1220 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 NLRP10Q86W26 655 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 KBTBD3Q8NAB2 608 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 HAUS7Q99871 368 aa16.52■□□□□ 0.24
TRIM4-201ENST00000349062 GPHNQ9NQX3 736 aaPredicted RBP16.52■□□□□ 0.24
TRIM4-201ENST00000349062 PTF1AQ7RTS3 328 aa16.52■□□□□ 0.23
TRIM4-201ENST00000349062 MAP3K15Q6ZN16 1313 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 GIGYF2Q6Y7W6 1299 aaKnown RBP16.51■□□□□ 0.23
TRIM4-201ENST00000349062 ZSWIM6Q9HCJ5 1215 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 TOMM22Q9NS69 142 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 COL18A1P39060 1754 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 ANKRD18BA2A2Z9 1011 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 UBAP1LF5GYI3 381 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 APOBRQ0VD83 1088 aa16.51■□□□□ 0.23
TRIM4-201ENST00000349062 NIP7Q9Y221 180 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRIM4-201ENST00000349062 ZSCAN22P10073 491 aaPredicted RBP16.5■□□□□ 0.23
TRIM4-201ENST00000349062 ZBTB38Q8NAP3 1195 aaPredicted RBP16.5■□□□□ 0.23
TRIM4-201ENST00000349062 CHMP4CQ96CF2 233 aa16.5■□□□□ 0.23
TRIM4-201ENST00000349062 MPHOSPH8Q99549 860 aa16.5■□□□□ 0.23
TRIM4-201ENST00000349062 ISCA1Q9BUE6 129 aa16.5■□□□□ 0.23
TRIM4-201ENST00000349062 COL15A1P39059 1388 aa16.5■□□□□ 0.23
TRIM4-201ENST00000349062 ZNF609O15014 1411 aa16.5■□□□□ 0.23
TRIM4-201ENST00000349062 TEX13AQ9BXU3 409 aaPredicted RBP16.5■□□□□ 0.23
TRIM4-201ENST00000349062 H3BQV1 296 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 M0R2C6 588 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 IFFO2Q5TF58 517 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 CDC37L1Q7L3B6 337 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 FAM184AQ8NB25 1140 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 RPS6KB1P23443 525 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 CRKLP46109 303 aaKnown RBP16.49■□□□□ 0.23
TRIM4-201ENST00000349062 MARCH10Q8NA82 808 aaPredicted RBP16.49■□□□□ 0.23
TRIM4-201ENST00000349062 TTLL11Q8NHH1 800 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 INTS4Q96HW7 963 aaKnown RBP16.49■□□□□ 0.23
TRIM4-201ENST00000349062 RBSNQ9H1K0 784 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 OSBP2Q969R2 916 aa16.49■□□□□ 0.23
TRIM4-201ENST00000349062 CAMK4Q16566 473 aa16.48■□□□□ 0.23
TRIM4-201ENST00000349062 JAG2Q9Y219 1238 aa16.48■□□□□ 0.23
TRIM4-201ENST00000349062 PTMSP20962 102 aa16.48■□□□□ 0.23
TRIM4-201ENST00000349062 LOC102724428A0A0B4J2F2 783 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 WTIPA6NIX2 430 aaPredicted RBP16.47■□□□□ 0.23
TRIM4-201ENST00000349062 RXRAP19793 462 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 PHKA1P46020 1223 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 SIK1P57059 783 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 ST3GAL1Q11201 340 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 SLC9C2Q5TAH2 1124 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 SUSD4Q5VX71 490 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 STOX1Q6ZVD7 989 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 GOLGA6L4A6NEF3 574 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 F13A1P00488 732 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 PCCAP05165 728 aaPredicted RBP16.47■□□□□ 0.23
TRIM4-201ENST00000349062 CCDC144CPQ8IYA2 1237 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 FBXW7Q969H0 707 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 PHF14O94880 888 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 CTSWP56202 376 aa16.47■□□□□ 0.23
TRIM4-201ENST00000349062 MAST3O60307 1309 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 RNF113AO15541 343 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 HSPD1P10809 573 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 CCDC173Q0VFZ6 552 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 TOB2Q14106 344 aaPredicted RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 ZSCAN30Q86W11 494 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 PUS7LQ9H0K6 701 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 STRCQ7RTU9 1775 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 AFDNP55196 1824 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 PTMAP06454 111 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 ITPK1Q13572 414 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 RRP12Q5JTH9 1297 aaKnown RBP16.46■□□□□ 0.23
TRIM4-201ENST00000349062 INCENPQ9NQS7 918 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 ABCF2Q9UG63 623 aa16.46■□□□□ 0.23
TRIM4-201ENST00000349062 UBN2Q6ZU65 1347 aa16.46■□□□□ 0.22
TRIM4-201ENST00000349062 SLC4A8Q2Y0W8 1093 aa16.46■□□□□ 0.22
TRIM4-201ENST00000349062 DNTTIP2Q5QJE6 756 aaKnown RBP16.46■□□□□ 0.22
TRIM4-201ENST00000349062 U3KPZ7 1027 aaPredicted RBP16.46■□□□□ 0.22
TRIM4-201ENST00000349062 XIRP1Q702N8 1843 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms