RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 RC3H1Q5TC82 1133 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 PRPF40BQ6NWY9 871 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 AK7Q96M32 723 aa27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 SEC62Q99442 399 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 SNRKQ9NRH2 765 aa27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 TBC1D9BQ66K14 1250 aa27.05■■□□□ 1.92
PDLIM2-202ENST00000308354 CCDC158Q5M9N0 1113 aa27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 TTC39AQ5SRH9 613 aa27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 KBTBD3Q8NAB2 608 aa27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 FKBP4Q02790 459 aaKnown RBP eCLIP27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 ERFEQ4G0M1 354 aa27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 VGLL2Q8N8G2 317 aa27.04■■□□□ 1.92
PDLIM2-202ENST00000308354 SBF2Q86WG5 1849 aa27.03■■□□□ 1.92
PDLIM2-202ENST00000308354 BCORQ6W2J9 1755 aa27.03■■□□□ 1.92
PDLIM2-202ENST00000308354 RTCBQ9Y3I0 505 aaKnown RBP27.03■■□□□ 1.92
PDLIM2-202ENST00000308354 SCARF1Q14162 830 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 CCDC129Q6ZRS4 1044 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 IL17RAQ96F46 866 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 RBM8AQ9Y5S9 174 aaKnown RBP27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 MED23Q9ULK4 1368 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 PHF14O94880 888 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 KCNJ4P48050 445 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 NARFQ9UHQ1 456 aa27.02■■□□□ 1.92
PDLIM2-202ENST00000308354 PDE8BO95263 885 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 CCDC152Q4G0S7 254 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 MAP4K1Q92918 833 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 BCL11BQ9C0K0 894 aaPredicted RBP27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 LRRC4BQ9NT99 713 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 DDX60Q8IY21 1712 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 ZPR1O75312 459 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 PI16Q6UXB8 463 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 C3orf67Q6ZVT6 689 aa27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 ARHGEF1Q92888 912 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-202ENST00000308354 SNAP23O00161 211 aa27■■□□□ 1.91
PDLIM2-202ENST00000308354 NECTIN1Q15223 517 aa27■■□□□ 1.91
PDLIM2-202ENST00000308354 MPHOSPH8Q99549 860 aa27■■□□□ 1.91
PDLIM2-202ENST00000308354 CPA1P15085 419 aa27■■□□□ 1.91
PDLIM2-202ENST00000308354 SSFA2P28290 1259 aa27■■□□□ 1.91
PDLIM2-202ENST00000308354 DDX11L8A8MPP1 907 aa26.99■■□□□ 1.91
PDLIM2-202ENST00000308354 TAF5LO75529 589 aa26.99■■□□□ 1.91
PDLIM2-202ENST00000308354 ADCK5Q3MIX3 580 aa26.99■■□□□ 1.91
PDLIM2-202ENST00000308354 GTF2E1P29083 439 aaPredicted RBP26.98■■□□□ 1.91
PDLIM2-202ENST00000308354 TMX3Q96JJ7 454 aa26.98■■□□□ 1.91
PDLIM2-202ENST00000308354 FAM196AQ6ZSG2 479 aa26.98■■□□□ 1.91
PDLIM2-202ENST00000308354 KRT27Q7Z3Y8 459 aa26.98■■□□□ 1.91
PDLIM2-202ENST00000308354 ZGPATQ8N5A5 531 aaKnown RBP26.98■■□□□ 1.91
PDLIM2-202ENST00000308354 CREB3L3Q68CJ9 461 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 CCDC24Q8N4L8 307 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 GBP4Q96PP9 640 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 LY75O60449 1722 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 TRIM37O94972 964 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 ZAP70P43403 619 aa26.97■■□□□ 1.91
PDLIM2-202ENST00000308354 HSP90B1P14625 803 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 CASTP20810 708 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 MCMDC2Q4G0Z9 681 aa26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 SETDB2Q96T68 719 aa26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 RFX7Q2KHR2 1363 aa26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 MROH5Q6ZUA9 1318 aa26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 TRAK2O60296 914 aa26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 JAKMIP1Q96N16 626 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-202ENST00000308354 LARP6Q9BRS8 491 aaKnown RBP26.95■■□□□ 1.9
PDLIM2-202ENST00000308354 TAF6LQ9Y6J9 622 aa26.95■■□□□ 1.9
PDLIM2-202ENST00000308354 SLC27A2O14975 620 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 IGHMBP2P38935 993 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 MCAMP43121 646 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 SCN7AQ01118 1682 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 TAF1LQ8IZX4 1826 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 COL4A1P02462 1669 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 PUM3Q15397 648 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 LRP5O75197 1615 aa26.94■■□□□ 1.9
PDLIM2-202ENST00000308354 ABCC12Q96J65 1359 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 RFC4P35249 363 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 MCM2P49736 904 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 TRAPPC3LQ5T215 181 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 KCNB2Q92953 911 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 ZKSCAN1P17029 563 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 PHKA1P46020 1223 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 PKP1Q13835 747 aa26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 COL9A3Q14050 684 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 NBPF5PQ86XG9 351 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 CWC22Q9HCG8 908 aaKnown RBP26.93■■□□□ 1.9
PDLIM2-202ENST00000308354 CCDC102BQ68D86 513 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 LPIN2Q92539 896 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 C4BP0C0L5 1744 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 BRWD3Q6RI45 1802 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 RNF113AO15541 343 aaKnown RBP26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 FGFR2P21802 821 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 TTC14Q96N46 770 aa26.92■■□□□ 1.9
PDLIM2-202ENST00000308354 ZMYM1Q5SVZ6 1142 aa26.91■■□□□ 1.9
PDLIM2-202ENST00000308354 GZF1Q9H116 711 aaPredicted RBP26.91■■□□□ 1.9
PDLIM2-202ENST00000308354 RTL9Q8NET4 1388 aa26.91■■□□□ 1.9
PDLIM2-202ENST00000308354 AK2P54819 239 aa26.9■■□□□ 1.9
PDLIM2-202ENST00000308354 NUCB2P80303 420 aa26.9■■□□□ 1.9
PDLIM2-202ENST00000308354 VPS53Q5VIR6 699 aa26.9■■□□□ 1.9
PDLIM2-202ENST00000308354 LAMB2P55268 1798 aa26.9■■□□□ 1.9
PDLIM2-202ENST00000308354 SPEF2Q9C093 1822 aa26.9■■□□□ 1.9
PDLIM2-202ENST00000308354 CYP2E1P05181 493 aaPredicted RBP26.89■■□□□ 1.9
PDLIM2-202ENST00000308354 CHRNDQ07001 517 aa26.89■■□□□ 1.9
PDLIM2-202ENST00000308354 HELLSQ9NRZ9 838 aa26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms