RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FOXP2O15409 715 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 WHAMMP3Q1A5X7 153 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 TMPOP42166 694 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 MSL3Q8N5Y2 521 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 RABGGTAQ92696 567 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 MYH10P35580 1976 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CFAP65Q6ZU64 1925 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 DDX46Q7L014 1031 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC151A5D8V7 595 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 RASSF2P50749 326 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 CNNM2Q9H8M5 875 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 MRGBPQ9NV56 204 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 ABCA9Q8IUA7 1624 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 SH3BP5O60239 455 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 FLOT1O75955 427 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 CNGA1P29973 690 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 NLRP5P59047 1200 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 MAP3K21Q5TCX8 1036 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 ODF2LQ9ULJ1 636 aa5.96□□□□□ -1.45
SCN1A-201ENST00000303395 SETBP1Q9Y6X0 1596 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NOL3O60936 208 aaKnown RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 PPP2R3AQ06190 1150 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NAA25Q14CX7 972 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 SEPT8Q92599 483 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 ARHGEF40Q8TER5 1519 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 AATKQ6ZMQ8 1374 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 UNC13BO14795 1591 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 BICDL2A1A5D9 508 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 ADCY5O95622 1261 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 ATP6V1AP38606 617 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 RILPL2Q969X0 211 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 SMC6Q96SB8 1091 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 OSBPL3Q9H4L5 887 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 THEGQ9P2T0 379 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NUP153P49790 1475 aaKnown RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 PHLPP2Q6ZVD8 1323 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 KIF5AQ12840 1032 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NBPF8Q3BBV2 869 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NUTM2DQ5VT03 806 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 ARHGAP27Q6ZUM4 889 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NUTM2AQ8IVF1 878 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 TSC1Q92574 1164 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 NCAPGQ9BPX3 1015 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 VCX3BQ9H321 246 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 KCNG1Q9UIX4 513 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 CALM1P0DP23 149 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 CALM2P0DP24 149 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 CALM3P0DP25 149 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 GTF2A1P52655 376 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 CETN1Q12798 172 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 PDLIM2Q96JY6 352 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 CTAGE9A4FU28 777 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 SRGAP3O43295 1099 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 KDM4AO75164 1064 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 MTHFSP49914 203 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 WDR78Q5VTH9 848 aa5.96□□□□□ -1.46
SCN1A-201ENST00000303395 JAKMIP1Q96N16 626 aaKnown RBP5.96□□□□□ -1.46
SCN1A-201ENST00000303395 RFX1P22670 979 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 GNAQP50148 359 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 RCAN1P53805 252 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FOXD4L5Q5VV16 416 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC102BQ68D86 513 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FOXD4L4Q8WXT5 416 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 MRPS27Q92552 414 aaKnown RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FSD1Q9BTV5 496 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 A0A1W2PQ27 194 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 A0A1W2PQ64 194 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 A0A1W2PQD8 194 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 SRRM3A6NNA2 597 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ALDH3A1P30838 453 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 SLC4A3P48751 1232 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC158Q5M9N0 1113 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FAM71BQ8TC56 605 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 TEX13AQ9BXU3 409 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 VCXQ9H320 206 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ECHDC1Q9NTX5 307 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ME1P48163 572 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 MNAT1P51948 309 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 SATB1Q01826 763 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FAM160A1Q05DH4 1040 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 SPECC1Q5M775 1068 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 TMTC1Q8IUR5 882 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 C14orf93Q9H972 538 aaKnown RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 PLCB1Q9NQ66 1216 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 HYPKQ9NX55 129 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ATP7BP35670 1465 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC14Q49A88 953 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 IQGAP3Q86VI3 1631 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 PANK1Q8TE04 598 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FEZ2Q9UHY8 353 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 SYCE3A1L190 88 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 TNNC1P63316 161 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 BICDL1Q6ZP65 573 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 TRMT2AQ8IZ69 625 aaKnown RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 ERBB4Q15303 1308 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 PCP11498 1178 aaKnown RBP5.95□□□□□ -1.46
SCN1A-201ENST00000303395 TSG101Q99816 390 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 FAM129AQ9BZQ8 928 aa5.95□□□□□ -1.46
SCN1A-201ENST00000303395 PSD3Q9NYI0 1048 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms