RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SKOR2Q2VWA4 1001 aaPredicted RBP20.33■□□□□ 0.85
CPSF4-201ENST00000292476 USPL1Q5W0Q7 1092 aa20.33■□□□□ 0.85
CPSF4-201ENST00000292476 TRIM6-TRIM34B2RNG4 842 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 MMP10P09238 476 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 CNTROBQ8N137 903 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 TNPO1Q92973 898 aaKnown RBP20.32■□□□□ 0.84
CPSF4-201ENST00000292476 SYT17Q9BSW7 474 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 CD2BP2O95400 341 aaKnown RBP20.32■□□□□ 0.84
CPSF4-201ENST00000292476 TNNI3KQ59H18 835 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 NLGN1Q8N2Q7 840 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 PI4K2BQ8TCG2 481 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 EAF2Q96CJ1 260 aaPredicted RBP20.32■□□□□ 0.84
CPSF4-201ENST00000292476 SETDB2Q96T68 719 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 AKAP2Q9Y2D5 859 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 FPGT-TNNI3KV9GXZ4 949 aa20.32■□□□□ 0.84
CPSF4-201ENST00000292476 NTSR2O95665 410 aa20.31■□□□□ 0.84
CPSF4-201ENST00000292476 TFCP2Q12800 502 aa20.31■□□□□ 0.84
CPSF4-201ENST00000292476 CEP126Q9P2H0 1117 aa20.31■□□□□ 0.84
CPSF4-201ENST00000292476 SCN7AQ01118 1682 aa20.31■□□□□ 0.84
CPSF4-201ENST00000292476 GOLGA6L3A6NEY3 463 aa20.3■□□□□ 0.84
CPSF4-201ENST00000292476 ITGA6P23229 1130 aa20.3■□□□□ 0.84
CPSF4-201ENST00000292476 CCDC152Q4G0S7 254 aa20.3■□□□□ 0.84
CPSF4-201ENST00000292476 ATG9AQ7Z3C6 839 aa20.3■□□□□ 0.84
CPSF4-201ENST00000292476 RILPL2Q969X0 211 aa20.3■□□□□ 0.84
CPSF4-201ENST00000292476 MYH3P11055 1940 aa20.29■□□□□ 0.84
CPSF4-201ENST00000292476 EPB41L2O43491 1005 aaKnown RBP20.29■□□□□ 0.84
CPSF4-201ENST00000292476 GTF2E1P29083 439 aaPredicted RBP20.29■□□□□ 0.84
CPSF4-201ENST00000292476 RTL9Q8NET4 1388 aa20.29■□□□□ 0.84
CPSF4-201ENST00000292476 ST18O60284 1047 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 TSHZ3Q63HK5 1081 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 TPTE2Q6XPS3 522 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 LDHAL6AQ6ZMR3 332 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 SYNE4Q8N205 404 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 CCDC8Q9H0W5 538 aaPredicted RBP20.28■□□□□ 0.84
CPSF4-201ENST00000292476 GREM2Q9H772 168 aa20.28■□□□□ 0.84
CPSF4-201ENST00000292476 CWC22Q9HCG8 908 aaKnown RBP20.28■□□□□ 0.84
CPSF4-201ENST00000292476 BCL2L12Q9HB09 334 aa20.27■□□□□ 0.84
CPSF4-201ENST00000292476 FAM177BA6PVY3 158 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 SLC10A5Q5PT55 438 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 TBC1D9BQ66K14 1250 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 NLGN2Q8NFZ4 835 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 EVI5LQ96CN4 794 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 ZNF594Q96JF6 807 aaPredicted RBP20.26■□□□□ 0.83
CPSF4-201ENST00000292476 HIP1O00291 1037 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 HCLS1P14317 486 aaPredicted RBP20.26■□□□□ 0.83
CPSF4-201ENST00000292476 NUCB2P80303 420 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 IL17RAQ96F46 866 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 CNNM1Q9NRU3 951 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 PARP3Q9Y6F1 533 aa20.26■□□□□ 0.83
CPSF4-201ENST00000292476 GOLGA6L22H0YM25 854 aa20.25■□□□□ 0.83
CPSF4-201ENST00000292476 ATP5JP18859 108 aa20.25■□□□□ 0.83
CPSF4-201ENST00000292476 DDR1Q08345 913 aa20.25■□□□□ 0.83
CPSF4-201ENST00000292476 LRRC24Q50LG9 513 aa20.25■□□□□ 0.83
CPSF4-201ENST00000292476 NBPF5PQ86XG9 351 aaPredicted RBP20.25■□□□□ 0.83
CPSF4-201ENST00000292476 TICAM2Q86XR7 235 aa20.25■□□□□ 0.83
CPSF4-201ENST00000292476 LAMB2P55268 1798 aa20.24■□□□□ 0.83
CPSF4-201ENST00000292476 BICDL1Q6ZP65 573 aa20.24■□□□□ 0.83
CPSF4-201ENST00000292476 FAM43AQ8N2R8 423 aa20.24■□□□□ 0.83
CPSF4-201ENST00000292476 CCDC85AQ96PX6 553 aaPredicted RBP20.24■□□□□ 0.83
CPSF4-201ENST00000292476 MROH5Q6ZUA9 1318 aa20.24■□□□□ 0.83
CPSF4-201ENST00000292476 IGHMBP2P38935 993 aaKnown RBP20.23■□□□□ 0.83
CPSF4-201ENST00000292476 MRE11P49959 708 aa20.23■□□□□ 0.83
CPSF4-201ENST00000292476 ANAPC15P60006 121 aa20.23■□□□□ 0.83
CPSF4-201ENST00000292476 NFIXQ14938 502 aa20.23■□□□□ 0.83
CPSF4-201ENST00000292476 SF3B3Q15393 1217 aaKnown RBP20.23■□□□□ 0.83
CPSF4-201ENST00000292476 CDC5LQ99459 802 aaKnown RBP20.23■□□□□ 0.83
CPSF4-201ENST00000292476 MPHOSPH8Q99549 860 aa20.23■□□□□ 0.83
CPSF4-201ENST00000292476 DBNLQ9UJU6 430 aaKnown RBP20.23■□□□□ 0.83
CPSF4-201ENST00000292476 RIPOR2Q9Y4F9 1068 aa20.23■□□□□ 0.83
CPSF4-201ENST00000292476 CHMLP26374 656 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 TM4SF1P30408 202 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 MCM2P49736 904 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 METTL24Q5JXM2 366 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 RUFY2Q8WXA3 655 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 NEUROD6Q96NK8 337 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 PUS3Q9BZE2 481 aaKnown RBP20.22■□□□□ 0.83
CPSF4-201ENST00000292476 CARMIL3Q8ND23 1372 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 MCCP23508 829 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 ERFEQ4G0M1 354 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 NLRP3Q96P20 1036 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 CD2APQ9Y5K6 639 aa20.22■□□□□ 0.83
CPSF4-201ENST00000292476 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.22■□□□□ 0.83
CPSF4-201ENST00000292476 A0A1B0GUL7 405 aa20.21■□□□□ 0.83
CPSF4-201ENST00000292476 POLRMTO00411 1230 aaKnown RBP20.21■□□□□ 0.83
CPSF4-201ENST00000292476 CCDC158Q5M9N0 1113 aa20.21■□□□□ 0.83
CPSF4-201ENST00000292476 ESYT1Q9BSJ8 1104 aa20.21■□□□□ 0.83
CPSF4-201ENST00000292476 TLR7Q9NYK1 1049 aaKnown RBP20.21■□□□□ 0.83
CPSF4-201ENST00000292476 ZNF609O15014 1411 aa20.21■□□□□ 0.83
CPSF4-201ENST00000292476 NPHP1O15259 732 aa20.2■□□□□ 0.82
CPSF4-201ENST00000292476 CYP2E1P05181 493 aaPredicted RBP20.2■□□□□ 0.82
CPSF4-201ENST00000292476 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.2■□□□□ 0.82
CPSF4-201ENST00000292476 DBNDD2Q9BQY9 259 aa20.2■□□□□ 0.82
CPSF4-201ENST00000292476 GORABQ5T7V8 394 aa20.19■□□□□ 0.82
CPSF4-201ENST00000292476 DDX60Q8IY21 1712 aaKnown RBP20.19■□□□□ 0.82
CPSF4-201ENST00000292476 PDE8BO95263 885 aa20.19■□□□□ 0.82
CPSF4-201ENST00000292476 XRCC6P12956 609 aaKnown RBP eCLIP20.19■□□□□ 0.82
CPSF4-201ENST00000292476 TIMM10P62072 90 aa20.19■□□□□ 0.82
CPSF4-201ENST00000292476 ABCC12Q96J65 1359 aa20.19■□□□□ 0.82
CPSF4-201ENST00000292476 BOLA2Q9H3K6 86 aa20.19■□□□□ 0.82
CPSF4-201ENST00000292476 DIAPH3Q9NSV4 1193 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms