RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 LINS1Q8NG48 757 aa15.46■□□□□ 0.07
C9orf3-201ENST00000277198 CCDC39Q9UFE4 941 aa15.46■□□□□ 0.07
C9orf3-201ENST00000277198 WWC3Q9ULE0 1092 aa15.46■□□□□ 0.07
C9orf3-201ENST00000277198 ZSCAN22P10073 491 aaPredicted RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 CSPP1Q1MSJ5 1256 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 FOXD4L5Q5VV16 416 aaPredicted RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 FOXD4L4Q8WXT5 416 aaPredicted RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 MAP3K2Q9Y2U5 619 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 COL15A1P39059 1388 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 RPAP1Q9BWH6 1393 aaPredicted RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 IFIT2P09913 472 aaKnown RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 AK2P54819 239 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 CWC27Q6UX04 472 aaKnown RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 NOL8Q76FK4 1167 aaKnown RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 USP48Q86UV5 1035 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 SNRKQ9NRH2 765 aa15.45■□□□□ 0.06
C9orf3-201ENST00000277198 ZNF330Q9Y3S2 320 aaPredicted RBP15.45■□□□□ 0.06
C9orf3-201ENST00000277198 STX6O43752 255 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 USPL1Q5W0Q7 1092 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 RUFY3Q7L099 469 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 RASEFQ8IZ41 740 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 ZSWIM6Q9HCJ5 1215 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 ZKSCAN5Q9Y2L8 839 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 RRP9O43818 475 aaKnown RBP15.44■□□□□ 0.06
C9orf3-201ENST00000277198 STARD3NLO95772 234 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 MAP4K4O95819 1239 aaPredicted RBP15.44■□□□□ 0.06
C9orf3-201ENST00000277198 CHAMP1Q96JM3 812 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 BCL2L12Q9HB09 334 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 SMC3Q9UQE7 1217 aa15.44■□□□□ 0.06
C9orf3-201ENST00000277198 ZKSCAN1P17029 563 aaPredicted RBP15.43■□□□□ 0.06
C9orf3-201ENST00000277198 UBE2HP62256 183 aa15.43■□□□□ 0.06
C9orf3-201ENST00000277198 DDR1Q08345 913 aa15.43■□□□□ 0.06
C9orf3-201ENST00000277198 DDX21Q9NR30 783 aaKnown RBP eCLIP15.43■□□□□ 0.06
C9orf3-201ENST00000277198 GRM8O00222 908 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 SYT1P21579 422 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 EIF5P55010 431 aaKnown RBP15.42■□□□□ 0.06
C9orf3-201ENST00000277198 CCDC183Q5T5S1 534 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 CYP46A1Q9Y6A2 500 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 F13A1P00488 732 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 CASTP20810 708 aaKnown RBP15.42■□□□□ 0.06
C9orf3-201ENST00000277198 NECTIN1Q15223 517 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 NLGN1Q8N2Q7 840 aa15.42■□□□□ 0.06
C9orf3-201ENST00000277198 SNRPA1P09661 255 aaKnown RBP15.41■□□□□ 0.06
C9orf3-201ENST00000277198 YBX3P16989 372 aaKnown RBP eCLIP15.41■□□□□ 0.06
C9orf3-201ENST00000277198 PDRG1Q9NUG6 133 aa15.41■□□□□ 0.06
C9orf3-201ENST00000277198 TBC1D2BQ9UPU7 963 aa15.41■□□□□ 0.06
C9orf3-201ENST00000277198 NBPF26B4DH59 902 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 ANXA1P04083 346 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 PSMA5P28066 241 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 G3BP1Q13283 466 aaKnown RBP eCLIP15.4■□□□□ 0.06
C9orf3-201ENST00000277198 NBPF10Q6P3W6 841 aaKnown RBP15.4■□□□□ 0.06
C9orf3-201ENST00000277198 NBPF15Q8N660 670 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 ALDH8A1Q9H2A2 487 aaPredicted RBP15.4■□□□□ 0.06
C9orf3-201ENST00000277198 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.4■□□□□ 0.06
C9orf3-201ENST00000277198 CCDC171Q6TFL3 1326 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 GADD45BO75293 160 aaPredicted RBP15.4■□□□□ 0.06
C9orf3-201ENST00000277198 ZPR1O75312 459 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 AACSQ86V21 672 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 MAP4K1Q92918 833 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 NARFQ9UHQ1 456 aa15.4■□□□□ 0.06
C9orf3-201ENST00000277198 TEX13AQ9BXU3 409 aaPredicted RBP15.39■□□□□ 0.05
C9orf3-201ENST00000277198 CD2APQ9Y5K6 639 aa15.39■□□□□ 0.05
C9orf3-201ENST00000277198 PTH1RQ03431 593 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 NFIXQ14938 502 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 ANKRD1Q15327 319 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 PROSER3Q2NL68 480 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 RNF20Q5VTR2 975 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 JAKMIP1Q96N16 626 aaKnown RBP15.38■□□□□ 0.05
C9orf3-201ENST00000277198 POLRMTO00411 1230 aaKnown RBP15.38■□□□□ 0.05
C9orf3-201ENST00000277198 GPR162Q16538 588 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 PRPF40BQ6NWY9 871 aaKnown RBP15.38■□□□□ 0.05
C9orf3-201ENST00000277198 BICDL1Q6ZP65 573 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 C10orf71Q711Q0 1435 aa15.38■□□□□ 0.05
C9orf3-201ENST00000277198 SASH1O94885 1247 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 TM4SF1P30408 202 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 IL6STP40189 918 aaPredicted RBP15.37■□□□□ 0.05
C9orf3-201ENST00000277198 NEXNQ0ZGT2 675 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 CWF19L2Q2TBE0 894 aaKnown RBP15.37■□□□□ 0.05
C9orf3-201ENST00000277198 TSGA10IPQ3SY00 556 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 UBE2Q2Q8WVN8 375 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 KAZALD1Q96I82 304 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 SUCLG2Q96I99 432 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 GDPD2Q9HCC8 539 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 CNPY2Q9Y2B0 182 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 PARP3Q9Y6F1 533 aa15.37■□□□□ 0.05
C9orf3-201ENST00000277198 PDCP20941 246 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 GJB2P29033 226 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 HSP90AA2PQ14568 343 aaPredicted RBP15.36■□□□□ 0.05
C9orf3-201ENST00000277198 PDIA6Q15084 440 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 TBC1D9BQ66K14 1250 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 CREB3L3Q68CJ9 461 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 RNF214Q8ND24 703 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 EAF2Q96CJ1 260 aaPredicted RBP15.36■□□□□ 0.05
C9orf3-201ENST00000277198 BICC1Q9H694 974 aaKnown RBP15.36■□□□□ 0.05
C9orf3-201ENST00000277198 HMG20BQ9P0W2 317 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 PA2G4Q9UQ80 394 aaKnown RBP15.36■□□□□ 0.05
C9orf3-201ENST00000277198 MTMR6Q9Y217 621 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 CAMTA2O94983 1202 aa15.36■□□□□ 0.05
C9orf3-201ENST00000277198 RBM8AQ9Y5S9 174 aaKnown RBP15.36■□□□□ 0.05
C9orf3-201ENST00000277198 A0A0G2JLW4 131 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms