RNA–Protein interactions for RNA: ENST00000261674.8

SFSWAP-201, Transcript of splicing factor SWAP, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,246 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-201ENST00000261674 KIF3AQ9Y496 699 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 HOXB7P09629 217 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 CBX1P83916 185 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 LRMPQ12912 555 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 XAGE3Q8WTP9 111 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 NRBP1Q9UHY1 535 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 PCDH11XQ9BZA7 1347 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 PCDH11YQ9BZA8 1340 aa17.12■□□□□ 0.33
SFSWAP-201ENST00000261674 EPHA10Q5JZY3 1008 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 PIGBQ92521 554 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 KDM6AO15550 1401 aaPredicted RBP17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 CEMIPQ8WUJ3 1361 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 HMGN5P82970 282 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 SLFNL1Q499Z3 407 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 DDX46Q7L014 1031 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 NEUROD6Q96NK8 337 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 KCNF1Q9H3M0 494 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 AFF2P51816 1311 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 A0A087WWV3 80 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 HIP1O00291 1037 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 FAM200AQ8TCP9 573 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 FUCA2Q9BTY2 467 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 DNAJC25Q9H1X3 360 aa17.11■□□□□ 0.33
SFSWAP-201ENST00000261674 RPS6KB1P23443 525 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 GUCY1B3Q02153 619 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 NR1I2O75469 434 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 MTX1Q13505 466 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 UBE3BQ7Z3V4 1068 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 BRF1Q92994 677 aa17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 C16orf45Q96MC5 204 aaPredicted RBP17.1■□□□□ 0.33
SFSWAP-201ENST00000261674 IGKV5-2P06315 115 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 MARCH10Q8NA82 808 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 ZNF592Q92610 1267 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 CBX8Q9HC52 389 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 MRVI1Q9Y6F6 885 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 JCADQ9P266 1359 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 SPDYE4A6NLX3 237 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 CCT2P78371 535 aaKnown RBP17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 TFCP2Q12800 502 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 TOB2Q14106 344 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 ANKRD1Q15327 319 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 Q6ZUG5 572 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 LEO1Q8WVC0 666 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 SCAND2PQ9GZW5 306 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 SPATA31A1Q5TZJ5 1347 aa17.09■□□□□ 0.33
SFSWAP-201ENST00000261674 ZNF165P49910 485 aa17.08■□□□□ 0.33
SFSWAP-201ENST00000261674 PRIMPOLQ96LW4 560 aa17.08■□□□□ 0.33
SFSWAP-201ENST00000261674 DDX21Q9NR30 783 aaKnown RBP eCLIP17.08■□□□□ 0.33
SFSWAP-201ENST00000261674 KIAA1524Q8TCG1 905 aa17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 ERCC4Q92889 916 aaPredicted RBP17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 USP42Q9H9J4 1324 aaKnown RBP17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 RIOK3O14730 519 aaKnown RBP17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 CHST3Q7LGC8 479 aa17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 NEK1Q96PY6 1258 aa17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 FTOQ9C0B1 505 aaKnown RBP eCLIP17.08■□□□□ 0.32
SFSWAP-201ENST00000261674 QTRT2Q9H974 415 aaKnown RBP17.07■□□□□ 0.32
SFSWAP-201ENST00000261674 PXDNLA1KZ92 1463 aa17.07■□□□□ 0.32
SFSWAP-201ENST00000261674 PPP4R3BQ5MIZ7 849 aa17.07■□□□□ 0.32
SFSWAP-201ENST00000261674 MTERF4Q7Z6M4 381 aaKnown RBP17.07■□□□□ 0.32
SFSWAP-201ENST00000261674 DBNDD2Q9BQY9 259 aa17.07■□□□□ 0.32
SFSWAP-201ENST00000261674 TAF5LO75529 589 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 BCL2L12Q9HB09 334 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 DBNLQ9UJU6 430 aaKnown RBP17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 DNAJC10Q8IXB1 793 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 ZNF710Q8N1W2 664 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 ZBTB3Q9H5J0 574 aa17.06■□□□□ 0.32
SFSWAP-201ENST00000261674 UTRNP46939 3433 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 NEURL1BA8MQ27 555 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 GOLGA6L19H0YKK7 550 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 GCKRQ14397 625 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 ANKRD13DQ6ZTN6 518 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 PGBD1Q96JS3 809 aa17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 FAM208AQ9UK61 1670 aaKnown RBP17.05■□□□□ 0.32
SFSWAP-201ENST00000261674 COL18A1P39060 1754 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 A0A087WZG4 1122 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 FMNL2Q96PY5 1086 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 NCOA5Q9HCD5 579 aaKnown RBP17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 OVOS2A0A0G2JMS6 1433 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 SPATA31A5Q5VU36 1347 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 SPATA31A7Q8IWB4 1347 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 FILIP1Q7Z7B0 1213 aa17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 ZHX1Q9UKY1 873 aaPredicted RBP17.04■□□□□ 0.32
SFSWAP-201ENST00000261674 BECN2A8MW95 431 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 GOLIM4O00461 696 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 TIMM10P62072 90 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.03■□□□□ 0.328e-7■■■□□ 16.8
SFSWAP-201ENST00000261674 CYP21A2P08686 494 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 APOBRQ0VD83 1088 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 DDX19AQ9NUU7 478 aaKnown RBP17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 CLIP2Q9UDT6 1046 aa17.03■□□□□ 0.32
SFSWAP-201ENST00000261674 IGSF3O75054 1194 aa17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 RAB11FIP4Q86YS3 637 aa17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 CCDC94Q9BW85 323 aaPredicted RBP17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 SPTLC3Q9NUV7 552 aa17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 COL16A1Q07092 1604 aaPredicted RBP17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 CACNA1FO60840 1977 aa17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 LRP6O75581 1613 aa17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 SNRPA1P09661 255 aaKnown RBP17.02■□□□□ 0.32
SFSWAP-201ENST00000261674 PDIA6Q15084 440 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms