RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 NEMFO60524 1076 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 URI1O94763 535 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 SDSP20132 328 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 UBA7P41226 1012 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 MAGEB6Q8N7X4 407 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 ZRANB1Q9UGI0 708 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 CLEC11AQ9Y240 323 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 ZSCAN22P10073 491 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 POLD1P28340 1107 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 DHX37Q8IY37 1157 aaKnown RBP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 KIF18AQ8NI77 898 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 BCCIPQ9P287 314 aaKnown RBP eCLIP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 PLXNC1O60486 1568 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 LMTK3Q96Q04 1460 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 GSTTP1A0A1W2PQM5 241 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 PPFIA3O75145 1194 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 CA8P35219 290 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 NAPAP54920 295 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 UBE2HP62256 183 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 RRAGBQ5VZM2 374 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 RRP36Q96EU6 259 aaKnown RBP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 ANKRD2Q9GZV1 360 aa9.98□□□□□ -0.81
PTCD3-201ENST00000254630 RBM8AQ9Y5S9 174 aaKnown RBP9.98□□□□□ -0.81
PTCD3-201ENST00000254630 TRAF1Q13077 416 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 CCDC174Q6PII3 467 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 SMARCC2Q8TAQ2 1214 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 TRIM47Q96LD4 638 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 ESYT1Q9BSJ8 1104 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 RBM27Q9P2N5 1060 aaKnown RBP9.97□□□□□ -0.81
PTCD3-201ENST00000254630 TMCO5BA8MYB1 307 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 CALM1P0DP23 149 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 CALM2P0DP24 149 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 CALM3P0DP25 149 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 KRT2P35908 639 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 PAFAH1B1P43034 410 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 CCDC102BQ68D86 513 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 ZSCAN30Q86W11 494 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 C8orf58Q8NAV2 365 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 PANK2Q9BZ23 570 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 TAOK3Q9H2K8 898 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 GDPD2Q9HCC8 539 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 SHTN1A0MZ66 631 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 POTEB2H3BUK9 544 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 C16orf71Q8IYS4 520 aaPredicted RBP9.97□□□□□ -0.81
PTCD3-201ENST00000254630 NECAB1Q8N987 351 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 STX8Q9UNK0 236 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 MACROD2A1Z1Q3 448 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 RNF113AO15541 343 aaKnown RBP9.97□□□□□ -0.81
PTCD3-201ENST00000254630 LMBR1LQ6UX01 489 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 VEZTQ9HBM0 779 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 PTPRKQ15262 1439 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 IRS4O14654 1257 aaPredicted RBP9.97□□□□□ -0.81
PTCD3-201ENST00000254630 BMP15O95972 392 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 HOXC9P31274 260 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 PLS1Q14651 629 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 HOOK3Q86VS8 718 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 PDCL2Q8N4E4 241 aa9.97□□□□□ -0.81
PTCD3-201ENST00000254630 RIMBP2O15034 1052 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 RNMTO43148 476 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 SYKP43405 635 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 OGFOD1Q8N543 542 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 LRRC2Q9BYS8 371 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 RBM25P49756 843 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 NAA15Q9BXJ9 866 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 ARHGEF12Q9NZN5 1544 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 GNAQP50148 359 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 TFCP2Q12800 502 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 IFI16Q16666 785 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 IL27Q8NEV9 243 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 TRMT1Q9NXH9 659 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 TFCP2L1Q9NZI6 479 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 CGNQ9P2M7 1197 aaKnown RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 USP25Q9UHP3 1055 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 A0A1W2PP64 1363 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 POLR3AO14802 1390 aaPredicted RBP9.96□□□□□ -0.81
PTCD3-201ENST00000254630 MYO5CQ9NQX4 1742 aa9.96□□□□□ -0.81
PTCD3-201ENST00000254630 CCDC172P0C7W6 258 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 SLC9C2Q5TAH2 1124 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 GIGYF2Q6Y7W6 1299 aaKnown RBP9.96□□□□□ -0.82
PTCD3-201ENST00000254630 NFATC2IPQ8NCF5 419 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.96□□□□□ -0.822e-10■□□□□ 9.2
PTCD3-201ENST00000254630 ESPNB1AK53 854 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 ADCY5O95622 1261 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 AFMP43652 599 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 BRF1Q92994 677 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 TTC41PQ6P2S7 1318 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 PDE1AP54750 535 aa9.96□□□□□ -0.82
PTCD3-201ENST00000254630 UHRF1BP1Q6BDS2 1440 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 NF2P35240 595 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 NOP2P46087 812 aaKnown RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 LMAN1P49257 510 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 ANKRD44Q8N8A2 993 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 TMX3Q96JJ7 454 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 TTC12Q9H892 705 aaPredicted RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 C6orf50Q9HD87 102 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 PA2G4Q9UQ80 394 aaKnown RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 PLCG2P16885 1265 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 TBC1D32Q96NH3 1257 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 FERMT1Q9BQL6 677 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 STAMBPO95630 424 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms