RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MPHOSPH6Q99547 160 aaKnown RBP15.49■□□□□ 0.07
SF3A1-201ENST00000215793 SKILP12757 684 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 ST5P78524 1137 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 GIGYF2Q6Y7W6 1299 aaKnown RBP15.48■□□□□ 0.07
SF3A1-201ENST00000215793 JARID2Q92833 1246 aaPredicted RBP15.48■□□□□ 0.07
SF3A1-201ENST00000215793 ASXL1Q8IXJ9 1541 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 F13A1P00488 732 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 UBE4AQ14139 1066 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 CHRNA2Q15822 529 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 MAATS1Q7Z4T9 603 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 TBC1D5Q92609 795 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 PUS7Q96PZ0 661 aaKnown RBP15.48■□□□□ 0.07
SF3A1-201ENST00000215793 NF2P35240 595 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 ANO6Q4KMQ2 910 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 SLC9C2Q5TAH2 1124 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 USP48Q86UV5 1035 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 NLRP3Q96P20 1036 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 DACT1Q9NYF0 836 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 CEP112Q8N8E3 955 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 CNPY2Q9Y2B0 182 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 LAMC3Q9Y6N6 1575 aa15.48■□□□□ 0.07
SF3A1-201ENST00000215793 NUP160Q12769 1436 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 Q6ZUG5 572 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 C8orf58Q8NAV2 365 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 TCEANC2Q96MN5 208 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 GTPBP4Q9BZE4 634 aaKnown RBP15.47■□□□□ 0.07
SF3A1-201ENST00000215793 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
SF3A1-201ENST00000215793 CALM1P0DP23 149 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 CALM2P0DP24 149 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 CALM3P0DP25 149 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 NAA16Q6N069 864 aaPredicted RBP15.47■□□□□ 0.07
SF3A1-201ENST00000215793 LRRC2Q9BYS8 371 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 POLR3AO14802 1390 aaPredicted RBP15.47■□□□□ 0.07
SF3A1-201ENST00000215793 TNRQ92752 1358 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 TRIM75PA6NK02 468 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 AFMP43652 599 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 CALML3P27482 149 aa15.47■□□□□ 0.07
SF3A1-201ENST00000215793 GNAT2P19087 354 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 HOMER2Q9NSB8 354 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 KDM5BQ9UGL1 1544 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 CTAGE15A4D2H0 777 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 CTAGE8P0CG41 777 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 CTAGE6Q86UF2 777 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 CTAGE4Q8IX94 777 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 DCTPP1Q9H773 170 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 NPHP3Q7Z494 1330 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 TRMT1LQ7Z2T5 733 aaKnown RBP15.46■□□□□ 0.07
SF3A1-201ENST00000215793 CCDC186Q7Z3E2 898 aa15.46■□□□□ 0.07
SF3A1-201ENST00000215793 PRPHP41219 470 aa15.46■□□□□ 0.06
SF3A1-201ENST00000215793 SPTLC2O15270 562 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 GTF2F1P35269 517 aaKnown RBP eCLIP15.45■□□□□ 0.06
SF3A1-201ENST00000215793 SETDB2Q96T68 719 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 ZSWIM4Q9H7M6 989 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 PAG1Q9NWQ8 432 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 PUF60Q9UHX1 559 aaKnown RBP15.45■□□□□ 0.06
SF3A1-201ENST00000215793 KRT13P13646 458 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 SRRTQ9BXP5 876 aaKnown RBP15.45■□□□□ 0.06
SF3A1-201ENST00000215793 ARFGAP3Q9NP61 516 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 NOLC1Q14978 699 aaKnown RBP eCLIP15.45■□□□□ 0.06
SF3A1-201ENST00000215793 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.45■□□□□ 0.06
SF3A1-201ENST00000215793 IKBKGQ9Y6K9 419 aa15.45■□□□□ 0.06
SF3A1-201ENST00000215793 HSF2BPO75031 334 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 CCDC155Q8N6L0 562 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 ZNF622Q969S3 477 aaKnown RBP eCLIP15.44■□□□□ 0.065e-7■□□□□ 10.6
SF3A1-201ENST00000215793 BICD1Q96G01 975 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 FBLN1P23142 703 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 EIF4A2Q14240 407 aaKnown RBP15.44■□□□□ 0.06
SF3A1-201ENST00000215793 SELENOOQ9BVL4 669 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 DNM1Q05193 864 aaKnown RBP15.44■□□□□ 0.06
SF3A1-201ENST00000215793 HEATR3Q7Z4Q2 680 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 ASIC1P78348 528 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 C6orf50Q9HD87 102 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 DNAI1Q9UI46 699 aa15.44■□□□□ 0.06
SF3A1-201ENST00000215793 TACC1O75410 805 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 LMAN1P49257 510 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 NMIQ13287 307 aaPredicted RBP15.43■□□□□ 0.06
SF3A1-201ENST00000215793 INTS4Q96HW7 963 aaKnown RBP15.43■□□□□ 0.06
SF3A1-201ENST00000215793 SOS1Q07889 1333 aaPredicted RBP15.43■□□□□ 0.06
SF3A1-201ENST00000215793 RAD50Q92878 1312 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 NAPAP54920 295 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 TUBB4BP68371 445 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 SLC39A6Q13433 755 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 PRDM10Q9NQV6 1147 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 RTL9Q8NET4 1388 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 PPIP5K1Q6PFW1 1433 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 AOPEPQ8N6M6 819 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 POLKQ9UBT6 870 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 FLT4P35916 1363 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 PARD3Q8TEW0 1356 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 MARCKSP29966 332 aaPredicted RBP15.43■□□□□ 0.06
SF3A1-201ENST00000215793 KRT83P78385 493 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 DNAJC25Q9H1X3 360 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 MSH6P52701 1360 aa15.43■□□□□ 0.06
SF3A1-201ENST00000215793 RNF113AO15541 343 aaKnown RBP15.42■□□□□ 0.06
SF3A1-201ENST00000215793 SLC4A8Q2Y0W8 1093 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 KRT222Q8N1A0 295 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 VAMP4O75379 141 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 HDAC9Q9UKV0 1011 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 RTL1A6NKG5 1358 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 PLCG2P16885 1265 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms