RNA–Protein interactions for RNA: ENST00000191018.9

CTSA-201, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-201ENST00000191018 IFIT1P09914 478 aaKnown RBP22.4■■□□□ 1.18
CTSA-201ENST00000191018 CNNM1Q9NRU3 951 aa22.4■■□□□ 1.18
CTSA-201ENST00000191018 CCNL1Q9UK58 526 aaPredicted RBP22.4■■□□□ 1.18
CTSA-201ENST00000191018 FAM177BA6PVY3 158 aa22.39■■□□□ 1.18
CTSA-201ENST00000191018 ADORA1P30542 326 aa22.39■■□□□ 1.18
CTSA-201ENST00000191018 CCDC158Q5M9N0 1113 aa22.39■■□□□ 1.18
CTSA-201ENST00000191018 ZNF589Q86UQ0 364 aaPredicted RBP22.39■■□□□ 1.18
CTSA-201ENST00000191018 COL24A1Q17RW2 1714 aa22.39■■□□□ 1.17
CTSA-201ENST00000191018 ATP2B3Q16720 1220 aa22.39■■□□□ 1.17
CTSA-201ENST00000191018 UPF3BQ9BZI7 483 aaKnown RBP22.39■■□□□ 1.17
CTSA-201ENST00000191018 FOXD4L1Q9NU39 408 aa22.39■■□□□ 1.17
CTSA-201ENST00000191018 GOLIM4O00461 696 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 PDE8BO95263 885 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 QTRT2Q9H974 415 aaKnown RBP22.38■■□□□ 1.17
CTSA-201ENST00000191018 BCL2L12Q9HB09 334 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 NARFQ9UHQ1 456 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 RBM8AQ9Y5S9 174 aaKnown RBP22.38■■□□□ 1.17
CTSA-201ENST00000191018 C4BP0C0L5 1744 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 AKAP11Q9UKA4 1901 aa22.38■■□□□ 1.17
CTSA-201ENST00000191018 MROH5Q6ZUA9 1318 aa22.37■■□□□ 1.17
CTSA-201ENST00000191018 TAF5LO75529 589 aa22.37■■□□□ 1.17
CTSA-201ENST00000191018 CCDC152Q4G0S7 254 aa22.37■■□□□ 1.17
CTSA-201ENST00000191018 PRPF40BQ6NWY9 871 aaKnown RBP22.37■■□□□ 1.17
CTSA-201ENST00000191018 TMX3Q96JJ7 454 aa22.37■■□□□ 1.17
CTSA-201ENST00000191018 BRWD3Q6RI45 1802 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 C4AP0C0L4 1744 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 RAB3GAP1Q15042 981 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 TTC39AQ5SRH9 613 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 TTC14Q96N46 770 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 TM6SF1Q9BZW5 370 aa22.36■■□□□ 1.17
CTSA-201ENST00000191018 CHGBP05060 677 aa22.35■■□□□ 1.17
CTSA-201ENST00000191018 CUL4AQ13619 759 aa22.35■■□□□ 1.17
CTSA-201ENST00000191018 MCMDC2Q4G0Z9 681 aa22.35■■□□□ 1.17
CTSA-201ENST00000191018 GORABQ5T7V8 394 aa22.35■■□□□ 1.17
CTSA-201ENST00000191018 CREB3L3Q68CJ9 461 aa22.35■■□□□ 1.17
CTSA-201ENST00000191018 ZNF512BQ96KM6 892 aaPredicted RBP22.35■■□□□ 1.17
CTSA-201ENST00000191018 BCL11BQ9C0K0 894 aaPredicted RBP22.35■■□□□ 1.17
CTSA-201ENST00000191018 GNPATO15228 680 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 USPL1Q5W0Q7 1092 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 CWC22Q9HCG8 908 aaKnown RBP22.34■■□□□ 1.17
CTSA-201ENST00000191018 SEC31BQ9NQW1 1179 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 MYH7P12883 1935 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 FGFR2P21802 821 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 SMIM5Q71RC9 77 aa22.34■■□□□ 1.17
CTSA-201ENST00000191018 TBC1D9BQ66K14 1250 aa22.33■■□□□ 1.17
CTSA-201ENST00000191018 HELLSQ9NRZ9 838 aa22.33■■□□□ 1.17
CTSA-201ENST00000191018 RTCBQ9Y3I0 505 aaKnown RBP22.33■■□□□ 1.17
CTSA-201ENST00000191018 SLC27A2O14975 620 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 ZKSCAN1P17029 563 aaPredicted RBP22.32■■□□□ 1.16
CTSA-201ENST00000191018 SCARF1Q14162 830 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 ADCK5Q3MIX3 580 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 ZMYM1Q5SVZ6 1142 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 SEC62Q99442 399 aaKnown RBP22.32■■□□□ 1.16
CTSA-201ENST00000191018 ZSWIM6Q9HCJ5 1215 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 RPAP1Q9BWH6 1393 aaPredicted RBP22.32■■□□□ 1.16
CTSA-201ENST00000191018 KCNJ4P48050 445 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 TSGA10IPQ3SY00 556 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 ERFEQ4G0M1 354 aa22.32■■□□□ 1.16
CTSA-201ENST00000191018 COL4A1P02462 1669 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 A0A1B0GUL6 1792 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 SSFA2P28290 1259 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 SF3B3Q15393 1217 aaKnown RBP22.31■■□□□ 1.16
CTSA-201ENST00000191018 PUM3Q15397 648 aaKnown RBP22.31■■□□□ 1.16
CTSA-201ENST00000191018 SLC10A5Q5PT55 438 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 AMIGO3Q86WK7 504 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 ZGPATQ8N5A5 531 aaKnown RBP22.31■■□□□ 1.16
CTSA-201ENST00000191018 LPIN2Q92539 896 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 TNPO1Q92973 898 aaKnown RBP22.31■■□□□ 1.16
CTSA-201ENST00000191018 MPHOSPH8Q99549 860 aa22.31■■□□□ 1.16
CTSA-201ENST00000191018 SRP68Q9UHB9 627 aaKnown RBP22.31■■□□□ 1.16
CTSA-201ENST00000191018 RNF113AO15541 343 aaKnown RBP22.3■■□□□ 1.16
CTSA-201ENST00000191018 CASTP20810 708 aaKnown RBP22.3■■□□□ 1.16
CTSA-201ENST00000191018 MCM4P33991 863 aa22.3■■□□□ 1.16
CTSA-201ENST00000191018 FKBP4Q02790 459 aaKnown RBP eCLIP22.3■■□□□ 1.16
CTSA-201ENST00000191018 RNF20Q5VTR2 975 aa22.3■■□□□ 1.16
CTSA-201ENST00000191018 CCDC129Q6ZRS4 1044 aa22.3■■□□□ 1.16
CTSA-201ENST00000191018 INTS4Q96HW7 963 aaKnown RBP22.3■■□□□ 1.16
CTSA-201ENST00000191018 HMG20BQ9P0W2 317 aa22.3■■□□□ 1.16
CTSA-201ENST00000191018 ARHGEF1Q92888 912 aaKnown RBP22.3■■□□□ 1.16
CTSA-201ENST00000191018 JAKMIP1Q96N16 626 aaKnown RBP22.3■■□□□ 1.16
CTSA-201ENST00000191018 ZPR1O75312 459 aa22.29■■□□□ 1.16
CTSA-201ENST00000191018 IGHMBP2P38935 993 aaKnown RBP22.29■■□□□ 1.16
CTSA-201ENST00000191018 MCAMP43121 646 aa22.29■■□□□ 1.16
CTSA-201ENST00000191018 ZAP70P43403 619 aa22.29■■□□□ 1.16
CTSA-201ENST00000191018 CYP2E1P05181 493 aaPredicted RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 ARID4AP29374 1257 aaPredicted RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 AK2P54819 239 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 VPS53Q5VIR6 699 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 UBR3Q6ZT12 1888 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 ZFYP08048 801 aaPredicted RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 NUCB2P80303 420 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 LRRFIP1Q32MZ4 808 aaKnown RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 SLFNL1Q499Z3 407 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 FAM196AQ6ZSG2 479 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 RUFY3Q7L099 469 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 HELBQ8NG08 1087 aaPredicted RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 NYXQ9GZU5 481 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 LRRC4BQ9NT99 713 aa22.28■■□□□ 1.16
CTSA-201ENST00000191018 U3KPZ7 1027 aaPredicted RBP22.28■■□□□ 1.16
CTSA-201ENST00000191018 CCDC102BQ68D86 513 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms