RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Ccdc34Q3UI66 367 aa19.78■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Ptcd1Q8C2E4 695 aaKnown RBP19.78■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Exoc6bA6H5Z3 810 aa19.77■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Dnajc2P54103 621 aaKnown RBP19.77■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Nlrp9bQ66X22 1003 aa19.77■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Tada3Q8R0L9 432 aa19.77■□□□□ 0.76
Ctcf-201ENSMUST00000005841 Ccdc112A0AUP1 442 aa19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Rfc1P35601 1131 aa19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 L1td1Q587J6 782 aaKnown RBP19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 TrhQ62361 256 aa19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Edc3Q8K2D3 508 aaKnown RBP19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Tmem119Q8R138 280 aa19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Tubb4aQ9D6F9 444 aa19.77■□□□□ 0.75
Ctcf-201ENSMUST00000005841 CoblQ5NBX1 1337 aaKnown RBP19.76■□□□□ 0.75
Ctcf-201ENSMUST00000005841 FntaQ61239 377 aa19.76■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Larp1Q6ZQ58 1072 aaKnown RBP19.76■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Mtmr6Q8VE11 617 aa19.76■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ppm1mQ8BU27 406 aa19.76■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ccdc96Q9CR92 584 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Mei1Q9D4I2 1268 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Col4a3bpQ9EQG9 624 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 VirmaA2AIV2 1811 aaKnown RBP19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Larp1bA0A0A6YXJ7 370 aaKnown RBP19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Nek3Q9R0A5 511 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 ZyxQ62523 564 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Trak2Q6P9N8 913 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Mei4Q8BRM6 389 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Xpo4Q9ESJ0 1151 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ecm29Q6PDI5 1840 aa19.75■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Pramel3A2AHA7 463 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Gm7903A2AWL1 463 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 AV320801A2AWL3 467 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Gm15023L7MUB4 467 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Frat2Q8K025 231 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Bag3Q9JLV1 577 aaKnown RBP19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 FAM186AQ9D9R9 1790 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ets1P27577 440 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 ChmQ9QXG2 665 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Rsrc2A2RTL5 376 aaKnown RBP19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ubxn4Q8VCH8 506 aa19.74■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Ifit1Q64282 463 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Naa16Q9DBB4 864 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 NmiO35309 314 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Pde3bQ61409 1100 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Sh3bgrQ9WUZ7 214 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Wdr19Q3UGF1 1341 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Lmod3E9QA62 571 aa19.73■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Slc4a10Q5DTL9 1118 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Tshz2Q68FE9 1030 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Dennd6aQ8BH65 605 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Dact1Q8R4A3 778 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Amotl1Q9D4H4 968 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Il1rapl2Q9ERS6 686 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Sipa1l2Q80TE4 1722 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Cyp2d34L7N463 504 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Shisa4Q8CA71 197 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Bicc1Q99MQ1 977 aaKnown RBP19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Myh7Q91Z83 1935 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Lmtk3Q5XJV6 1424 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Grin2dQ03391 1323 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 CgnP59242 1191 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 4930504O13RikQ8C5Z9 145 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Rassf4Q8CB96 322 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Carmil3Q3UFQ8 1375 aa19.72■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Usp13Q5BKP2 858 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Spag5Q7TME2 1165 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Pnpla2Q8BJ56 486 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Q8CEZ4 452 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Tgs1Q923W1 853 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Mb21d2Q8C525 428 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Bicd2Q921C5 820 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Q3UJC8 639 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Arglu1Q3UL36 271 aaKnown RBP19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Etf1Q8BWY3 437 aaKnown RBP19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 AtrnQ9WU60 1428 aa19.71■□□□□ 0.75
Ctcf-201ENSMUST00000005841 Spata16Q8C636 571 aa19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 MlecQ6ZQI3 291 aaKnown RBP19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Rbm33Q9CXK9 1231 aaKnown RBP19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Idi1P58044 227 aa19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Tbx2Q60707 711 aa19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Atp1a3Q6PIC6 1013 aa19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Pdia6Q922R8 440 aaKnown RBP19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Kdm6aO70546 1401 aa19.7■□□□□ 0.74
Ctcf-201ENSMUST00000005841 HnrnpmQ9D0E1 729 aaKnown RBP19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Kif3cO35066 796 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Cyp2d10P24456 504 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Igfbp6P47880 238 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Psme1P97371 249 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Rnf20Q5DTM8 973 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Fsd2Q8BZ52 692 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Nek11Q8C0Q4 628 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Gm156Q58A37 223 aa19.69■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Ccng2O08918 344 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Limch1Q3UH68 1057 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Cep89Q9CZX2 791 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Nol7Q9D7Z3 254 aaKnown RBP19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Map3k2Q61083 619 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Zbtb40Q6PCS8 1258 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Iqcb1Q8BP00 598 aa19.68■□□□□ 0.74
Ctcf-201ENSMUST00000005841 Pde3aQ9Z0X4 1141 aa19.68■□□□□ 0.74
Retrieved 100 of 22,080 RNA–protein pairs in 112.3 ms