RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MAN2C1Q9NTJ4 1040 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 ZNF346Q9UL40 294 aaKnown RBP17.54■□□□□ 0.4
SHMT1-209ENST00000582653 HIF3AQ9Y2N7 669 aa17.54■□□□□ 0.4
SHMT1-209ENST00000582653 A0A1W2PPW3 197 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 SLC22A23A1A5C7 686 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 CXCR6O00574 342 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 FFAR1O14842 300 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 MGRN1O60291 552 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 ZNF682O95780 498 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 SLC7A2P52569 658 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 CD47Q08722 323 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 SGCAQ16586 387 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 LIPNQ5VXI9 398 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 HDDC2Q7Z4H3 204 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 TREML1Q86YW5 311 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 NRMQ8IXM6 262 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 OR51A7Q8NH64 312 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 NABP1Q96AH0 204 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 FNDC11Q9BVV2 318 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 C19orf24Q9BVV8 132 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 SIAEQ9HAT2 523 aa17.53■□□□□ 0.4
SHMT1-209ENST00000582653 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.53■□□□□ 0.44e-8■■■■□ 23.7
SHMT1-209ENST00000582653 TRAV27A0A087WT01 109 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 IQCMA0A1B0GVH7 501 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 GSTA4O15217 222 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 IFNW1P05000 195 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 LCKP06239 509 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 SAGP10523 405 aaPredicted RBP17.52■□□□□ 0.4
SHMT1-209ENST00000582653 ACHEP22303 614 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 IFNA8P32881 189 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 DVL1P1P54792 670 aaPredicted RBP17.52■□□□□ 0.4
SHMT1-209ENST00000582653 UCP2P55851 309 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 CTXN1P60606 82 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 MRPS11P82912 194 aaKnown RBP17.52■□□□□ 0.4
SHMT1-209ENST00000582653 MRPS34P82930 218 aaKnown RBP17.52■□□□□ 0.4
SHMT1-209ENST00000582653 PLP2Q04941 152 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 TBC1D28Q2M2D7 210 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 PABPC1L2AQ5JQF8 200 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 SLC25A47Q6Q0C1 308 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 ARPINQ7Z6K5 226 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 ICA1LQ8NDH6 482 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 C1orf198Q9H425 327 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 TAAR3PQ9P1P4 343 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 AP3M1Q9Y2T2 418 aa17.52■□□□□ 0.4
SHMT1-209ENST00000582653 NPIPB13A6NJU9 1138 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 B4DSR2 109 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 NPIPB4C9JG80 1138 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 CCDC22O60826 627 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 NCR1O76036 304 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 PTHP01270 115 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF32P17041 273 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 CCNOP22674 350 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 MAGEB1P43366 347 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 GSK3BP49841 420 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 RPL27P61353 136 aaKnown RBP17.51■□□□□ 0.39
SHMT1-209ENST00000582653 SRSF2Q01130 221 aaKnown RBP17.51■□□□□ 0.39
SHMT1-209ENST00000582653 HSF2Q03933 536 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 PRKCDQ05655 676 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 FHL1Q13642 323 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 CCNIQ14094 377 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 TRAM2Q15035 370 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 NKPD1Q17RQ9 610 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 C8orf82Q6P1X6 216 aaPredicted RBP17.51■□□□□ 0.39
SHMT1-209ENST00000582653 TBPL2Q6SJ96 375 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 FKBP9P1Q75LS8 142 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 CBLL1Q75N03 491 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 OFCC1Q8IZS5 231 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 RFLNBQ8N5W9 214 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 LRRC75AQ8NAA5 344 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 OR1J2Q8NGS2 313 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 SYNPRQ8TBG9 265 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 YIPF5Q969M3 257 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 HOPXQ9BPY8 73 aaPredicted RBP17.51■□□□□ 0.39
SHMT1-209ENST00000582653 RACGAP1Q9H0H5 632 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 KCNN2Q9H2S1 579 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 SMURF2Q9HAU4 748 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 CCNB1IP1Q9NPC3 277 aa17.51■□□□□ 0.39
SHMT1-209ENST00000582653 STX18Q9P2W9 335 aaKnown RBP17.51■□□□□ 0.39
SHMT1-209ENST00000582653 A0A087WUU8 490 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 SNAP29O95721 258 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 SERPINA1P01009 418 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF250P15622 560 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 NCK1P16333 377 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 PCMT1P22061 227 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 APLNRP35414 380 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 RAD52P43351 418 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 GPR6P46095 362 aaPredicted RBP17.5■□□□□ 0.39
SHMT1-209ENST00000582653 SELENOVP59797 346 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 ERVK-25P63136 954 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 IFI44LQ53G44 452 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 OAFQ86UD1 273 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 OR13C2Q8NGS9 318 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 AKR7LQ8NHP1 331 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF519Q8TB69 540 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 C11orf40Q8WZ69 217 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 HSH2DQ96JZ2 352 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 NARFLQ9H6Q4 476 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 EFCAB1Q9HAE3 211 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 GPR160Q9UJ42 338 aa17.5■□□□□ 0.39
SHMT1-209ENST00000582653 IGLV3-9A0A075B6K5 115 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms