RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NTF4P34130 210 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ALDH3B2P48448 385 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ENTPD1P49961 510 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 SH3BGRP55822 239 aaPredicted RBP13.5□□□□□ -0.25
SS18-215ENST00000580642 MRPL28Q13084 256 aaKnown RBP13.5□□□□□ -0.25
SS18-215ENST00000580642 GALEQ14376 348 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 HSPB2Q16082 182 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 CARD17Q5XLA6 110 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 PCSK4Q6UW60 755 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ZNF627Q7L945 461 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ZNF367Q7RTV3 350 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 CD163Q86VB7 1156 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ATCAYQ86WG3 371 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 WDFY1Q8IWB7 410 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 SLC35F2Q8IXU6 374 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ZNF100Q8IYN0 542 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 SYS1Q8N2H4 156 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 OR51L1Q8NGJ5 315 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 OTOSQ8NHW6 89 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 SGCDQ92629 289 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 RORBQ92753 470 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 RERGLQ9H628 205 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ISYNA1Q9NPH2 558 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ERVK13-1Q9NX77 482 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 NDUFA13Q9P0J0 144 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 MALT1Q9UDY8 824 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 UGT2A1Q9Y4X1 527 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 KIAA1549Q9HCM3 1950 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 TLN1Q9Y490 2541 aaKnown RBP13.49□□□□□ -0.25
SS18-215ENST00000580642 ZNF587BE7ETH6 402 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 MYL12BO14950 172 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SULT1C4O75897 302 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 KRT33AO76009 404 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 IL2RAP01589 272 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 LIMS3P0CW19 117 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 LIMS4P0CW20 117 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 ALOX5APP20292 161 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 CEACAM8P31997 349 aaPredicted RBP13.49□□□□□ -0.25
SS18-215ENST00000580642 CASP6P55212 293 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 BDH1Q02338 343 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 FMODQ06828 376 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 EGR3Q06889 387 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 ACSM1Q08AH1 577 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SPHARQ15513 63 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 C1QTNF12Q5T7M4 302 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SYT6Q5T7P8 510 aaPredicted RBP13.49□□□□□ -0.25
SS18-215ENST00000580642 FAM27BQ5VT28 67 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 XAF1Q6GPH4 301 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SLC18B1Q6NT16 456 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 DEGS2Q6QHC5 323 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 RPTNQ6XPR3 784 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 DPPA2Q7Z7J5 298 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SYT9Q86SS6 491 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 CDC20BQ86Y33 519 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 ERI1Q8IV48 349 aaKnown RBP13.49□□□□□ -0.25
SS18-215ENST00000580642 KLHL36Q8N4N3 616 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 C9orf106Q8NAJ2 232 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 ZNF511Q8NB15 262 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 OR10H4Q8NGA5 316 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 OR10H5Q8NGA6 315 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 ZNF649Q9BS31 505 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 NELFAQ9H3P2 528 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 SIAEQ9HAT2 523 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 POLE4Q9NR33 117 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 PLSCR4Q9NRQ2 329 aa13.49□□□□□ -0.25
SS18-215ENST00000580642 MRPL22Q9NWU5 206 aaKnown RBP13.49□□□□□ -0.25
SS18-215ENST00000580642 IGKV1D-43A0A0B4J1Z2 117 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 ZNF99A8MXY4 864 aaPredicted RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 ZNF593O00488 134 aaPredicted RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 ATXN7O15265 892 aaPredicted RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 UPK3AO75631 287 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 IL18BPO95998 194 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 TFP02787 698 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 TACSTD2P09758 323 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 MSR1P21757 451 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 WNT4P56705 351 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 ADAM8P78325 824 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 PIGFQ07326 219 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 ETFDHQ16134 617 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 ST3GAL2Q16842 350 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 TSPO2Q5TGU0 170 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 FBXW9Q5XUX1 488 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 RTL6Q6ICC9 239 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 TMEM211Q6ICI0 200 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 KCTD18Q6PI47 426 aaPredicted RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 B3GLCTQ6Y288 498 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 PLEKHG7Q6ZR37 379 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 DOLPP1Q86YN1 238 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 OR6N2Q8NGY6 317 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 NSMAFQ92636 917 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 MUL1Q969V5 352 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 ZNF775Q96BV0 537 aaPredicted RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 BOD1Q96IK1 185 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 COG8Q96MW5 612 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 CNTNAP3BQ96NU0 1288 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 SFXN3Q9BWM7 321 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 CDADC1Q9BWV3 514 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 RBM24Q9BX46 236 aaKnown RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 CNTNAP3Q9BZ76 1288 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 CRLF2Q9HC73 371 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms