RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 VENTXO95231 258 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TFAP2AP05549 437 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 GSTT2P0CG29 244 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 GSTT2BP0CG30 244 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ITGA2P17301 1181 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 GTF2E2P29084 291 aaKnown RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 AQP1P29972 269 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ALDH3B1P43353 468 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 GIPRP48546 466 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 GZMMP51124 257 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 DVL1P1P54792 670 aaPredicted RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 STX1BP61266 288 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 PUDPQ08623 228 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 C1DQ13901 141 aaKnown RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 CCNIQ14094 377 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 SCARB2Q14108 478 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RAB39AQ14964 217 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 MAD2L1BPQ15013 274 aaPredicted RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 GSG1Q2KHT4 349 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RUNDC3AQ59EK9 446 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TMEM255AQ5JRV8 349 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 METTL21CQ5VZV1 264 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 LRFN4Q6PJG9 635 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 DEF8Q6ZN54 512 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 DCDC5Q6ZRR9 648 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 C1orf229Q6ZS94 237 aaPredicted RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 PXKQ7Z7A4 578 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RETREG3Q86VR2 466 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RBM45Q8IUH3 476 aaKnown RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 SKA3Q8IX90 412 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 CCDC36Q8IYA8 594 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 PQLC1Q8N2U9 271 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 LRRC17Q8N6Y2 441 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 PACRGLQ8N7B6 248 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 IL17RDQ8NFM7 739 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 SEMA6DQ8NFY4 1073 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 OR6T1Q8NGN1 323 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 CLDND2Q8NHS1 167 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ANGPTL6Q8NI99 470 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TMEM54Q969K7 222 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 SLC47A1Q96FL8 570 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 PLEKHA8Q96JA3 519 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ARHGDIGQ99819 225 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 FOXB1Q99853 325 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 SYT3Q9BQG1 590 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TMEM43Q9BTV4 400 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ZNF426Q9BUY5 554 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RAD21L1Q9H4I0 556 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ZNF385DQ9H6B1 395 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 ARMC7Q9H6L4 198 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TCF7L2Q9NQB0 619 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 CCDC167Q9P0B6 97 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 RPS6KB2Q9UBS0 482 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 TMEFF2Q9UIK5 374 aaPredicted RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 FBXO9Q9UK97 447 aaPredicted RBP5.76□□□□□ -1.49
VPS53-213ENST00000572334 FZR1Q9UM11 496 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 CMAHPQ9Y471 501 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 CORINQ9Y5Q5 1042 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 NOX1Q9Y5S8 564 aa5.76□□□□□ -1.49
VPS53-213ENST00000572334 PKD1L1Q8TDX9 2849 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 FAM172BPA6NC97 362 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 SAC3D1A6NKF1 404 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 FAM25AB3EWG3 89 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 FAM25CB3EWG5 89 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 FAM25GB3EWG6 89 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 C5orf58C9J3I9 102 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 M0R233 179 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 AKAP8O43823 692 aaKnown RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 FMO6PO60774 539 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 AVPP01185 164 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 OPN1SWP03999 348 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ASAH2BP0C7U1 165 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 PGA4P0DJD7 388 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 PGA3P0DJD8 388 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 CD79AP11912 226 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 IFNGR1P15260 489 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 TCN1P20061 433 aaPredicted RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 CD247P20963 164 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 CAPZA2P47755 286 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ATP4BP51164 291 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 RGS8P57771 180 aaPredicted RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 ERVS71-1P61550 626 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 LMO4P61968 165 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 RAB1AP62820 205 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 IL1RL1Q01638 556 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 RUNX1T1Q06455 604 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ZP4Q12836 540 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 PMS2P3Q13401 168 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 APOFQ13790 326 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 SQLEQ14534 574 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ZNF74Q16587 644 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 HIST3H3Q16695 136 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 MEX3DQ86XN8 651 aaKnown RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 RFLNBQ8N5W9 214 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 SPERTQ8NA61 448 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 HIPK4Q8NE63 616 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 OR5J2Q8NH18 312 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 OR6X1Q8NH79 312 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 SUN5Q8TC36 379 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms