RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 IFT27Q9BW83 186 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 RNF121Q9H920 327 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SIAEQ9HAT2 523 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 CCNB1IP1Q9NPC3 277 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 B3GNT2Q9NY97 397 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 IL20RAQ9UHF4 553 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SPEF1Q9Y4P9 236 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 USF3Q68DE3 2245 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 ITPR3Q14573 2671 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 IQCMA0A1B0GVH7 501 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 ZNF503-AS2A6NEH8 195 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 VSTM5A8MXK1 200 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 H7C1C5 153 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 ARPC3O15145 178 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 DEAF1O75398 565 aaPredicted RBP11.29□□□□□ -0.6
CLK3-224ENST00000568605 RENP00797 406 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 DANCRP0C864 163 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 MSR1P21757 451 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 TTKP33981 857 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 FABP6P51161 128 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 FXYD6P3P58550 94 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 PCBD1P61457 104 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 RPS23P62266 143 aaKnown RBP11.29□□□□□ -0.6
CLK3-224ENST00000568605 LCN6P62502 163 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 HSF2Q03933 536 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 SHEQ5VZ18 495 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 DTX2Q86UW9 622 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 MUC15Q8N387 334 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 LRRC18Q8N456 261 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 CLDN22Q8N7P3 220 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 OR10G2Q8NGC3 310 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 GIPC3Q8TF64 312 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 SNX18Q96RF0 628 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 SH3GL3Q99963 347 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 WACQ9BTA9 647 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 DGCR6LQ9BY27 220 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 GSX2Q9BZM3 304 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 GRIP2Q9C0E4 1043 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 SYT4Q9H2B2 425 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 SEC61A2Q9H9S3 476 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 CBLN4Q9NTU7 201 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 TBC1D23Q9NUY8 699 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 ZNF224Q9NZL3 707 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 FBXO9Q9UK97 447 aaPredicted RBP11.29□□□□□ -0.6
CLK3-224ENST00000568605 IER3IP1Q9Y5U9 82 aa11.29□□□□□ -0.6
CLK3-224ENST00000568605 IGHV2OR16-5A0A0B4J2B6 119 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 SLC22A23A1A5C7 686 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 E7EQL1 145 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 IDH3BO43837 385 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 TXNDC12O95881 172 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 CELA3BP08861 270 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 ZNF14P17017 642 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 ZNF26P17031 533 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 CRABP1P29762 137 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 APOBEC3AP31941 199 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 PTH2RP49190 550 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 NKX6-1P78426 367 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 SNTB2Q13425 540 aaKnown RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 TESK1Q15569 626 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 SGCAQ16586 387 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 TBC1D28Q2M2D7 210 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 PGGHGQ32M88 737 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 ZNF770Q6IQ21 691 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 B3GLCTQ6Y288 498 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 RASSF6Q6ZTQ3 369 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 FOXL2NBQ6ZUU3 175 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 NUP37Q8NFH4 326 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 OR1J2Q8NGS2 313 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 TEX47Q8TBZ9 253 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 NABP1Q96AH0 204 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 PERPQ96FX8 193 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 SAMD8Q96LT4 415 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 GPA33Q99795 319 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 TRAF4Q9BUZ4 470 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 ZNF556Q9HAH1 456 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 NOX3Q9HBY0 568 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 CA10Q9NS85 328 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 VNN3Q9NY84 501 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 VSX1Q9NZR4 365 aaPredicted RBP11.28□□□□□ -0.6
CLK3-224ENST00000568605 DNAJB9Q9UBS3 223 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 BAIAP2Q9UQB8 552 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 UGT2A1Q9Y4X1 527 aa11.28□□□□□ -0.6
CLK3-224ENST00000568605 F8P00451 2351 aa11.27□□□□□ -0.6
CLK3-224ENST00000568605 FLNAP21333 2647 aaKnown RBP11.27□□□□□ -0.6
CLK3-224ENST00000568605 C12orf71A8MTZ7 269 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 KHDRBS3O75525 346 aaKnown RBP11.27□□□□□ -0.61
CLK3-224ENST00000568605 SERPINA5P05154 406 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 SOD3P08294 240 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 CST2P09228 141 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 FCGR1AP12314 374 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 PAX1P15863 534 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 CDAP32320 146 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 APLNRP35414 380 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 ATP5J2P56134 94 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 SNRPD2P62316 118 aaKnown RBP11.27□□□□□ -0.61
CLK3-224ENST00000568605 SCRN3Q0VDG4 424 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 COX10Q12887 443 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 PPP1R8Q12972 351 aaKnown RBP11.27□□□□□ -0.61
CLK3-224ENST00000568605 DAG1Q14118 895 aa11.27□□□□□ -0.61
CLK3-224ENST00000568605 RAB39AQ14964 217 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms