RNA–Protein interactions for RNA: ENST00000568586.5

RAB40C-211, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-211ENST00000568586 LIMS1P48059 325 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 RAP1BP61224 184 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 RAP1AP62834 184 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 VLDLRP98155 873 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 GALK2Q01415 458 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 FMODQ06828 376 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 CD47Q08722 323 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 TOP3AQ13472 1001 aaPredicted RBP25.3■■□□□ 1.64
RAB40C-211ENST00000568586 TMEM249Q2WGJ8 235 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 ZBED5Q49AG3 693 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 FAM27BQ5VT28 67 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 FOXL2NBQ6ZUU3 175 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 FUZQ9BT04 418 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 MAGEL2Q9UJ55 1249 aa25.3■■□□□ 1.64
RAB40C-211ENST00000568586 SLC22A23A1A5C7 686 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 PTP4A3O75365 173 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 TP53P04637 393 aaPredicted RBP25.29■■□□□ 1.64
RAB40C-211ENST00000568586 GPR4P46093 362 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 RRM2BQ7LG56 351 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 IGFN1Q86VF2 1251 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 PYURFQ96I23 114 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 CDRT15Q96T59 188 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 RNF121Q9H920 327 aa25.29■■□□□ 1.64
RAB40C-211ENST00000568586 YLPM1P49750 1951 aaKnown RBP25.28■■□□□ 1.64
RAB40C-211ENST00000568586 SYNGR3O43761 229 aa25.28■■□□□ 1.64
RAB40C-211ENST00000568586 CD14P08571 375 aa25.28■■□□□ 1.64
RAB40C-211ENST00000568586 CDAP32320 146 aa25.28■■□□□ 1.64
RAB40C-211ENST00000568586 PAQR4Q8N4S7 273 aaPredicted RBP25.28■■□□□ 1.64
RAB40C-211ENST00000568586 NDE1Q9NXR1 346 aa25.28■■□□□ 1.64
RAB40C-211ENST00000568586 AHCYL1O43865 530 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 CRLF1O75462 422 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 USF1P22415 310 aaPredicted RBP25.27■■□□□ 1.64
RAB40C-211ENST00000568586 NR4A2P43354 598 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 OMPP47874 163 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 KRT72Q14CN4 511 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 GKAP1Q5VSY0 366 aaPredicted RBP25.27■■□□□ 1.64
RAB40C-211ENST00000568586 FAM122BQ7Z309 247 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 ZCCHC24Q8N2G6 241 aaKnown RBP25.27■■□□□ 1.64
RAB40C-211ENST00000568586 LRRC18Q8N456 261 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 CLDN22Q8N7P3 220 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 OR1J2Q8NGS2 313 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 SIGLEC7Q9Y286 467 aa25.27■■□□□ 1.64
RAB40C-211ENST00000568586 ERCC1P07992 297 aaPredicted RBP25.26■■□□□ 1.63
RAB40C-211ENST00000568586 ADRA2AP08913 450 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 ITGA2P17301 1181 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 TCN1P20061 433 aaPredicted RBP25.26■■□□□ 1.63
RAB40C-211ENST00000568586 GIFP27352 417 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 PLP2Q04941 152 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 SEC23BQ15437 767 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 C16orf89Q6UX73 402 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 CPEB3Q8NE35 698 aaKnown RBP25.26■■□□□ 1.63
RAB40C-211ENST00000568586 NSMAFQ92636 917 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 FOXN4Q96NZ1 517 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 GPX7Q96SL4 187 aaPredicted RBP25.26■■□□□ 1.63
RAB40C-211ENST00000568586 PIMREGQ9BSJ6 248 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 KCNN2Q9H2S1 579 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 DYNLRB1Q9NP97 96 aa25.26■■□□□ 1.63
RAB40C-211ENST00000568586 TRBV4-1A0A0J9YWV2 114 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 IQCMA0A1B0GVH7 501 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 ERVK-25P63136 954 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 TBC1D28Q2M2D7 210 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 PABPC1L2AQ5JQF8 200 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 ZNF540Q8NDQ6 660 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 FAM46AQ96IP4 442 aaKnown RBP25.25■■□□□ 1.63
RAB40C-211ENST00000568586 CCT8L2Q96SF2 557 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 MS4A5Q9H3V2 200 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 ADAM18Q9Y3Q7 739 aa25.25■■□□□ 1.63
RAB40C-211ENST00000568586 SH3PXD2BA1X283 911 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 M0R233 179 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 ARPC2O15144 300 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 CST2P09228 141 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 ZNF250P15622 560 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 ZNF32P17041 273 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 MNAT1P51948 309 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 SGCAQ16586 387 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 FGD3Q5JSP0 725 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 LRP11Q86VZ4 500 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 ZNF786Q8N393 782 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 NDEL1Q9GZM8 345 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 LRMDAQ9H2I8 198 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 CDH20Q9HBT6 801 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 NRIP3Q9NQ35 241 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 GRHPRQ9UBQ7 328 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 REV1Q9UBZ9 1251 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 ADAM21Q9UKJ8 722 aa25.24■■□□□ 1.63
RAB40C-211ENST00000568586 CHD3Q12873 2000 aaKnown RBP25.24■■□□□ 1.63
RAB40C-211ENST00000568586 DIRAS1O95057 198 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 NDUFB2O95178 105 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 STAMBPO95630 424 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 CCL2P13500 99 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 DAOP14920 347 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 MSX2P35548 267 aaPredicted RBP25.23■■□□□ 1.63
RAB40C-211ENST00000568586 RPL4P36578 427 aaKnown RBP25.23■■□□□ 1.63
RAB40C-211ENST00000568586 UCP2P55851 309 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 SMIM11AP58511 58 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 DEFB107AQ8IZN7 70 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 FITM2Q8N6M3 262 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 Q96M85 177 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 NSMCE2Q96MF7 247 aa25.23■■□□□ 1.63
RAB40C-211ENST00000568586 SYT3Q9BQG1 590 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms