RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ZNF837Q96EG3 531 aaPredicted RBP18.14■□□□□ 0.49
CLN3-212ENST00000564574 BOD1Q96IK1 185 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 HDHD5Q9BXW7 423 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 OR51V1Q9H2C8 321 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 KCNJ16Q9NPI9 418 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 RASSF1Q9NS23 344 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 CLN6Q9NWW5 311 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 COA3Q9Y2R0 106 aaPredicted RBP18.14■□□□□ 0.49
CLN3-212ENST00000564574 UGT2A1Q9Y4X1 527 aa18.14■□□□□ 0.49
CLN3-212ENST00000564574 A0A1W2PPL8 197 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 SLC22A31A6NKX4 558 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 FAM90A27PA6NNH2 459 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 GNAO1P09471 354 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 PSMB1P20618 241 aaKnown RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 FOXG1P55316 489 aaPredicted RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 ARF1P84077 181 aaKnown RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 TMED1Q13445 227 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 ETFDHQ16134 617 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 KLHL12Q53G59 568 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 OR7E24Q6IFN5 339 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 MEPCEQ7L2J0 689 aaKnown RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 CXorf67Q86X51 503 aaPredicted RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 OR1K1Q8NGR3 316 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 ZNF582Q96NG8 517 aaPredicted RBP18.13■□□□□ 0.49
CLN3-212ENST00000564574 OR10A4Q9H209 315 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 TMEM38BQ9NVV0 291 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 TENM4Q6N022 2769 aa18.13■□□□□ 0.49
CLN3-212ENST00000564574 CIB4A0PJX0 185 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 DENRO43583 198 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 GYPBP06028 91 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 CLUP10909 449 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 FMO3P31513 532 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 PYCR1P32322 319 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 CDH11P55287 796 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 RPS7P62081 194 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 HSF2Q03933 536 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 APOFQ13790 326 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 C1QTNF12Q5T7M4 302 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 LINC01590Q5TEZ4 76 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 C9orf135Q5VTT2 229 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 ANKRD16Q6P6B7 361 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 ZNF813Q6ZN06 617 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 BBS1Q8NFJ9 593 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 FBLIM1Q8WUP2 373 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 RNASE6Q93091 150 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 KISS1RQ969F8 398 aaPredicted RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 USB1Q9BQ65 265 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 NELFAQ9H3P2 528 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 GALNT8Q9NY28 637 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 DNAJC27Q9NZQ0 273 aa18.12■□□□□ 0.49
CLN3-212ENST00000564574 WARS2Q9UGM6 360 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-212ENST00000564574 ASH1LQ9NR48 2969 aaKnown RBP18.12■□□□□ 0.49
CLN3-212ENST00000564574 SH3D21A4FU49 640 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 WIPF3A6NGB9 483 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 LYZL6O75951 148 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 AGFG2O95081 481 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 FARS2O95363 451 aaKnown RBP18.11■□□□□ 0.49
CLN3-212ENST00000564574 HRGP04196 525 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 GAAP10253 952 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 HOXB1P14653 301 aaPredicted RBP18.11■□□□□ 0.49
CLN3-212ENST00000564574 HTR1FP30939 366 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 GABRA6Q16445 453 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 KCNMB1Q16558 191 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 STAC2Q6ZMT1 411 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 BHLHA15Q7RTS1 189 aaPredicted RBP18.11■□□□□ 0.49
CLN3-212ENST00000564574 BCDIN3DQ7Z5W3 292 aaKnown RBP18.11■□□□□ 0.49
CLN3-212ENST00000564574 C17orf78Q8N4C9 275 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 STEAP2Q8NFT2 490 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 OR6K6Q8NGW6 343 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 APH1BQ8WW43 257 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 ZNRF4Q8WWF5 429 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 TEAD3Q99594 435 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 SEC61A2Q9H9S3 476 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 SIAEQ9HAT2 523 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 POLE4Q9NR33 117 aa18.11■□□□□ 0.49
CLN3-212ENST00000564574 SETXQ7Z333 2677 aaKnown RBP18.11■□□□□ 0.49
CLN3-212ENST00000564574 HCFC1P51610 2035 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 CCDC182A6NF36 153 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 FAM171A2A8MVW0 826 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 ENTPD6O75354 484 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 HLA-DQA2P01906 255 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 OR8G3PP0DMU2 310 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 MSR1P21757 451 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 IL32P24001 234 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 LSM6P62312 80 aaKnown RBP18.1■□□□□ 0.49
CLN3-212ENST00000564574 CDK5R2Q13319 367 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 FAM27BQ5VT28 67 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 CCDC36Q8IYA8 594 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 SLC22A24Q8N4F4 322 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 SLC26A10Q8NG04 563 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 OR51L1Q8NGJ5 315 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 BCL2L2Q92843 193 aaPredicted RBP18.1■□□□□ 0.49
CLN3-212ENST00000564574 NABP1Q96AH0 204 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 WACQ9BTA9 647 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 MARCH7Q9H992 704 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 HAO2Q9NYQ3 351 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 KCNG2Q9UJ96 466 aa18.1■□□□□ 0.49
CLN3-212ENST00000564574 CACNA1CQ13936 2221 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 NKX2-6A6NCS4 301 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms