RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 APOBEC1P41238 236 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 ACAA2P42765 397 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 IDH2P48735 452 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 CYB561P49447 251 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 DAPP51397 102 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 POLR2HP52434 150 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 ZNF136P52737 540 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SMSP52788 366 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CRISP1P54107 249 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CTBP2P56545 445 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 PRPS1P60891 318 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ADARB1P78563 741 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 PRKCDQ05655 676 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 NNATQ16517 81 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SMN1Q16637 294 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 ZNF791Q3KP31 576 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 CDONQ4KMG0 1287 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ACER2Q5QJU3 275 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 DCAF10Q5QP82 559 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 RBM48Q5RL73 367 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 MEDAGQ5VYS4 303 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 PODNL1Q6PEZ8 512 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ZNF474Q6S9Z5 364 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 CASP12Q6UXS9 341 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 RASSF6Q6ZTQ3 369 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 TMPRSS11FQ6ZWK6 438 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 KCTD9Q7L273 389 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 GRINAQ7Z429 371 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 MRGPREQ86SM8 312 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 IGFN1Q86VF2 1251 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SIAH3Q8IW03 269 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CYP4Z2PQ8N1L4 340 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 CADM2Q8N3J6 435 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 AQP11Q8NBQ7 271 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ZNF248Q8NDW4 579 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 FAM71CQ8NEG0 241 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 OR4K5Q8NGD3 323 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 OR52L1Q8NGH7 329 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SLC7A13Q8TCU3 470 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 HIST1H2ACQ93077 130 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 HGDQ93099 445 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 ZC3HAV1LQ96H79 300 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 SLC38A2Q96QD8 506 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 FAM110AQ9BQ89 295 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 THAP7Q9BT49 309 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 GABARAPL3Q9BY60 117 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 MEGF9Q9H1U4 602 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 TOR3AQ9H497 397 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 VCX3AQ9NNX9 186 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 AKIP1Q9NQ31 210 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 IMPAD1Q9NX62 359 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 TUBA8Q9NY65 449 aaPredicted RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 STMN3Q9NZ72 180 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 PPP4R1LQ9P1A2 415 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 FBXL4Q9UKA2 621 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 SLC7A7Q9UM01 511 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 TPRKBQ9Y3C4 175 aa4.59□□□□□ -1.67
LDLR-209ENST00000558528 MRPS18CQ9Y3D5 142 aaKnown RBP4.59□□□□□ -1.67
LDLR-209ENST00000558528 HIVEP1P15822 2718 aa4.59□□□□□ -1.68
LDLR-209ENST00000558528 ICE1Q9Y2F5 2266 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CACNA1DQ01668 2161 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 PI4KAP42356 2102 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CEP192Q8TEP8 1941 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TMEM131Q92545 1883 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NIPBLQ6KC79 2804 aaeCLIP4.58□□□□□ -1.68
LDLR-209ENST00000558528 A0A087WUU8 490 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NPIPA5A0A0B4J1W7 369 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 A0A1B0GWA3 101 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TMEM200CA6NKL6 621 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 GJE1A6NN92 205 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 A8MVM7 634 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 EFCAB9A8MZ26 197 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NPIPA7E9PJI5 369 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 H3BN98 237 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 KLRC4-KLRK1H3BQV0 150 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 FFAR1O14842 300 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 BCKDKO14874 412 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ZNF208O43345 1280 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 IDH3BO43837 385 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 HCN1O60741 890 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ICOSLGO75144 302 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CBR3O75828 277 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OR6B1O95007 311 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NADKO95544 446 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 SNAP29O95721 258 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 EPPINO95925 133 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 MT-ATP6P00846 226 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OPN1MWP04001 364 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RLN1P04808 185 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CCDC159P0C7I6 412 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 GKN3PP0CG01 181 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NPIPA8P0DM63 369 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OPN1MW2P0DN77 364 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OPN1MW3P0DN78 364 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 MED14OSP0DP75 135 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 APEHP13798 732 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 CNR1P21554 472 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ITGA3P26006 1051 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OMPP47874 163 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms