RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SLC17A1Q14916 467 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 TEX30Q5JUR7 227 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 FDX2Q6P4F2 183 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 ZNF679Q8IYX0 411 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 OR2G2Q8NGZ5 317 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 OR6X1Q8NH79 312 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 ACOT12Q8WYK0 555 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 NSMAFQ92636 917 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 SLC25A44Q96H78 314 aaPredicted RBP18.47■□□□□ 0.55
VPS28-209ENST00000528142 DIRAS2Q96HU8 199 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 ABHD6Q9BV23 337 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 SRRQ9GZT4 340 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 ELOVL3Q9HB03 270 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 FAIMQ9NVQ4 179 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 KLHL9Q9P2J3 617 aa18.47■□□□□ 0.55
VPS28-209ENST00000528142 A0A1B0GTH9 108 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 OR4C45A6NMZ5 311 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 CNR1P21554 472 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 GABREP78334 506 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 TRIM16LQ309B1 348 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 CEP78Q5JTW2 689 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 THEM4Q5T1C6 240 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 IDNKQ5T6J7 187 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 SFXN4Q6P4A7 337 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 MZT2AQ6P582 158 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 LRRN1Q6UXK5 716 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 DTX1Q86Y01 620 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 RBP7Q96R05 134 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 ZCCHC4Q9H5U6 513 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 LRFN1Q9P244 771 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 TEKT2Q9UIF3 430 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 RASD1Q9Y272 281 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 PTPRBP23467 1997 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 PINLYPA6NC86 204 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 ZNF879B4DU55 563 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 HPGDSO60760 199 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 HRGP04196 525 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 ZNF43P17038 809 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 CD97P48960 835 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 GPR85P60893 370 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 FOXO1Q12778 655 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 AIMP2Q13155 320 aaKnown RBP18.46■□□□□ 0.55
VPS28-209ENST00000528142 EIF2B1Q14232 305 aaKnown RBP18.46■□□□□ 0.55
VPS28-209ENST00000528142 ABHD17BQ5VST6 288 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 SPINK14Q6IE38 97 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 TMPRSS12Q86WS5 348 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 IL22RA1Q8N6P7 574 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 MINDY2Q8NBR6 621 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 NOXO1Q8NFA2 376 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 OR5AK2Q8NH90 309 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 ADAMTS14Q8WXS8 1223 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 KCTD12Q96CX2 325 aaKnown RBP18.46■□□□□ 0.55
VPS28-209ENST00000528142 SOSTQ9BQB4 213 aa18.46■□□□□ 0.55
VPS28-209ENST00000528142 MRPS18CQ9Y3D5 142 aaKnown RBP18.46■□□□□ 0.55
VPS28-209ENST00000528142 A0A0J9YW62 118 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 CDRT15L2A8MXV6 281 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 EIF1BO60739 113 aaKnown RBP18.45■□□□□ 0.54
VPS28-209ENST00000528142 NEURL1O76050 574 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 F10P00742 488 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 IGHG1P01857 330 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 ZNF823P16415 610 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 RAB3BP20337 219 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 CD82P27701 267 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 CAMK2DQ13557 499 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 KCTD18Q6PI47 426 aaPredicted RBP18.45■□□□□ 0.54
VPS28-209ENST00000528142 HDDC2Q7Z4H3 204 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 YRDCQ86U90 279 aaKnown RBP18.45■□□□□ 0.54
VPS28-209ENST00000528142 GLB1L2Q8IW92 636 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 PRSS35Q8N3Z0 413 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 OR52N5Q8NH56 324 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 RNF128Q8TEB7 428 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 DCBLD2Q96PD2 775 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 NOX4Q9NPH5 578 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 POLE4Q9NR33 117 aa18.45■□□□□ 0.54
VPS28-209ENST00000528142 TRBV5-5A0A0J9YX44 114 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 FABP12A6NFH5 140 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 AQP8O94778 261 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 WNT11O96014 354 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 ITGA3P26006 1051 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 EVX1P49640 407 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 TOMM20Q15388 145 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 HIST3H3Q16695 136 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 SLC25A35Q3KQZ1 300 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 HSD17B12Q53GQ0 312 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 FAM131AQ6UXB0 335 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 SLC22A16Q86VW1 577 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 SLC39A7Q92504 469 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 C4orf45Q96LM5 186 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 DERL3Q96Q80 235 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 ZFP64Q9NPA5 681 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 AHCTF1Q8WYP5 2266 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 GJE1A6NN92 205 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 MAGEB1P43366 347 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 KIR3DL2P43630 455 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 AGFG1P52594 562 aaKnown RBP18.44■□□□□ 0.54
VPS28-209ENST00000528142 CLRN1P58418 232 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 CSNK2A1P68400 391 aaPredicted RBP18.44■□□□□ 0.54
VPS28-209ENST00000528142 XKRXQ6PP77 449 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 SYT9Q86SS6 491 aa18.44■□□□□ 0.54
VPS28-209ENST00000528142 OR14L1PQ8NHC6 308 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms