RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 OR10H4Q8NGA5 316 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 OR4D6Q8NGJ1 314 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 FRAT1Q92837 279 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 FAM131CQ96AQ9 280 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 VSIG2Q96IQ7 327 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 GLT1D1Q96MS3 346 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 CHID1Q9BWS9 393 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 RAB1BQ9H0U4 201 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 IL26Q9NPH9 171 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 KCNJ16Q9NPI9 418 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 TXLNGQ9NUQ3 528 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 TDRD15B5MCY1 1934 aaKnown RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 RLFQ13129 1914 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 SCAMP2O15127 329 aaKnown RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 LYPLA1O75608 230 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 HBE1P02100 147 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 CCL2P13500 99 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 SP4Q02446 784 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF92Q03936 586 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF658Q5TYW1 1059 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 SLC35D2Q76EJ3 337 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 MOB1BQ7L9L4 216 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 SNX20Q7Z614 316 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 THOC6Q86W42 341 aaKnown RBP3.56□□□□□ -1.84
VPS13A-212ENST00000493341 MNS1Q8NEH6 495 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 SDR42E1Q8WUS8 393 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 DNASE2BQ8WZ79 361 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 FGF14Q92915 247 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 TSSK3Q96PN8 268 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 BBS2Q9BXC9 721 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 PTGES2Q9H7Z7 377 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF302Q9NR11 478 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 ADAM22Q9P0K1 906 aa3.56□□□□□ -1.84
VPS13A-212ENST00000493341 TSPAN11A1L157 253 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 LYRM9A8MSI8 78 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 C12orf77C9JDV5 145 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 H7C0C1 242 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 RFXANKO14593 260 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 SNAPINO95295 136 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 FOLR1P15328 257 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 FMO3P31513 532 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 DEKP35659 375 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 ANP32AP39687 249 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 RFC3P40938 356 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 CCR8P51685 355 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 SLC25A11Q02978 314 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 TWF1Q12792 350 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 GSG1Q2KHT4 349 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 PGGHGQ32M88 737 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 C1orf100Q5SVJ3 147 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 PDPK2PQ6A1A2 396 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 NDUFAF7Q7L592 441 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 PID1Q7Z2X4 250 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 TMEM135Q86UB9 458 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 COMTD1Q86VU5 262 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 KIF2BQ8N4N8 673 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 GATSQ8NAP1 163 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 OR51F2Q8NH61 342 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 GTSF1Q8WW33 167 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 RASL10AQ92737 203 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 TMEM54Q969K7 222 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 NAPGQ99747 312 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 CNPY3Q9BT09 278 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 POLR2J2Q9GZM3 115 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 POLR2J3Q9H1A7 115 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 DEFB129Q9H1M3 183 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 NXF3Q9H4D5 531 aaKnown RBP3.55□□□□□ -1.84
VPS13A-212ENST00000493341 TMEM38AQ9H6F2 299 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 MCUBQ9NWR8 336 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 ADGRA3Q8IWK6 1321 aa3.55□□□□□ -1.84
VPS13A-212ENST00000493341 A0A0G2JLM5 398 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 GOLGA8QA0A0J9YX86 632 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 XRCC2O43543 280 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 DPM1O60762 260 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 FKBP6O75344 327 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CMA1P23946 247 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 MDH2P40926 338 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 SIGLEC14Q08ET2 396 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF763Q0D2J5 394 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 C12orf54Q6X4T0 127 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF621Q6ZSS3 439 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 SPATA3Q8NHX4 192 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 TFGQ92734 400 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 DYNLL2Q96FJ2 89 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 RIOK2Q9BVS4 552 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CTPS2Q9NRF8 586 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 APOBEC3BQ9UH17 382 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF229Q9UJW7 825 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF580Q9UK33 172 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 IGKV1D-13A0A0B4J2D9 117 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 A0A0J9YWU9 116 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 HCRTR1O43613 425 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 GMDSO60547 372 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 MPDU1O75352 247 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 SEMG1P04279 462 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 IGKV1-13P0DP09 117 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CALM1P0DP23 149 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CALM2P0DP24 149 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CALM3P0DP25 149 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CAPN2P17655 700 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 159.2 ms