RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 MED18Q9BUE0 208 aa8.4□□□□□ -1.06
SF3B1-211ENST00000487698 KLHL9Q9P2J3 617 aa8.4□□□□□ -1.06
SF3B1-211ENST00000487698 ING1Q9UK53 422 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-211ENST00000487698 LOC400499M0QZD8 3231 aa8.4□□□□□ -1.06
SF3B1-211ENST00000487698 NCOA6Q14686 2063 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF716A6NP11 495 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 HSPB2A8KAH6 182 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 DVL2O14641 736 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CXCL13O43927 109 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF432O94892 652 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MPZL1O95297 269 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 IL1AP01583 271 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OR8G3PP0DMU2 310 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF708P17019 499 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF133P52736 654 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CLDN17P56750 224 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CLDN18P56856 261 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CLRN1P58418 232 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ROM1Q03395 351 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 HSPB2Q16082 182 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MEP1BQ16820 701 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 DEFB109BQ30KR1 87 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OTPQ5XKR4 325 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SLC25A47Q6Q0C1 308 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 GLB1L2Q8IW92 636 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 UBQLNLQ8IYU4 475 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF454Q8N9F8 522 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZIC4Q8N9L1 334 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 TMEM178AQ8NBL3 297 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OR6Q1Q8NGQ2 317 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MCFD2Q8NI22 146 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 FNDC8Q8TC99 324 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 HAVCR2Q8TDQ0 301 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ASB17Q8WXJ9 295 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF385AQ96PM9 386 aaKnown RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OR2M2Q96R28 347 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 HDHD5Q9BXW7 423 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 BARHL1Q9BZE3 327 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SLC6A15Q9H2J7 730 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MMP27Q9H306 513 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 WASF3Q9UPY6 502 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 GSTK1Q9Y2Q3 226 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CSAG2Q9Y5P2 127 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 KCNMB2Q9Y691 235 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 NPIPA2E9PIF3 369 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 NPIPA3F8WFD2 350 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 PSMD9O00233 223 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 AQP8O94778 261 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 KRT8P05787 483 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SPARCP09486 303 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 TACSTD2P09758 323 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 PSMB10P40306 273 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OPRL1P41146 370 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 GDI2P50395 445 aaKnown RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 NANOS3P60323 173 aaKnown RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 PPIAP62937 165 aaKnown RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 PLGLB1Q02325 96 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SLC3A1Q07837 685 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MRPL28Q13084 256 aaKnown RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SLC18B1Q6NT16 456 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 LRRC69Q6ZNQ3 347 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 FAM220AQ7Z4H9 259 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 FAM109AQ8N4B1 249 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 MS4A15Q8N5U1 240 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 HSD17B8Q92506 261 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 GHSRQ92847 366 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 TMEM54Q969K7 222 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 CPNE4Q96A23 557 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SLC25A46Q96AG3 418 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 OR8B4Q96RC9 309 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 TTYH2Q9BSA4 534 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 ACKR4Q9NPB9 350 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 AKIP1Q9NQ31 210 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 GALNT8Q9NY28 637 aa8.39□□□□□ -1.07
SF3B1-211ENST00000487698 SHISA3A0PJX4 238 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 CD8B2A6NJW9 211 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF726A6NNF4 738 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 TLX3O43711 291 aaPredicted RBP8.38□□□□□ -1.07
SF3B1-211ENST00000487698 CDRT1O95170 752 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 WNT11O96014 354 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 CD8BP10966 210 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 NR2C1P13056 603 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 EDNRAP25101 427 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 LAP3P28838 519 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 SDC2P34741 201 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 SOX6P35712 828 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 EIF1AXP47813 144 aaKnown RBP8.38□□□□□ -1.07
SF3B1-211ENST00000487698 BMXP51813 675 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 RPS11P62280 158 aaKnown RBP eCLIP8.38□□□□□ -1.07
SF3B1-211ENST00000487698 FOXC1Q12948 553 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 RNFT1Q5M7Z0 435 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 LIPNQ5VXI9 398 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 CARD17Q5XLA6 110 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 LRFN4Q6PJG9 635 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 SLC22A16Q86VW1 577 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 YIPF7Q8N8F6 280 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 ABHD4Q8TB40 342 aa8.38□□□□□ -1.07
SF3B1-211ENST00000487698 ST7LQ8TDW4 575 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms