RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CALHM3Q86XJ0 350 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 OR51F2Q8NH61 342 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 LRRC58Q96CX6 371 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 METTL17Q9H7H0 456 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-210ENST00000472880 CCNB1IP1Q9NPC3 277 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 C20orf141Q9NUB4 165 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 RIMS3Q9UJD0 308 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 MED31Q9Y3C7 131 aa16.89■□□□□ 0.29
COL9A3-210ENST00000472880 FXYD1O00168 92 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 MRASO14807 208 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 WNT9BO14905 357 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 CDC14BO60729 498 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 SLC2A10O95528 541 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 MMP7P09237 267 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-210ENST00000472880 NR2C1P13056 603 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 DRD4P21917 467 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 MDH1P40925 334 aaKnown RBP16.88■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF133P52736 654 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-210ENST00000472880 ARFIP2P53365 341 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 TEKQ02763 1124 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 CD47Q08722 323 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 SF3A3Q12874 501 aaKnown RBP eCLIP16.88■□□□□ 0.292e-7■■■■■ 27.2
COL9A3-210ENST00000472880 PIN1Q13526 163 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-210ENST00000472880 MOGQ16653 247 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 COQ5Q5HYK3 327 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 PABPC1L2AQ5JQF8 200 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 OR1J1Q8NGS3 322 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 MOSPD2Q8NHP6 518 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 LRRC37BQ96QE4 947 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 OCEL1Q9H607 264 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 SMURF2Q9HAU4 748 aa16.88■□□□□ 0.29
COL9A3-210ENST00000472880 GMNCA6NCL1 334 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 BBIP1A8MTZ0 92 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 TPD52L2O43399 206 aaKnown RBP16.87■□□□□ 0.29
COL9A3-210ENST00000472880 NPPAP01160 153 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 THRBP10828 461 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 CCNOP22674 350 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 OR1E2P47887 323 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 MRPS34P82930 218 aaKnown RBP16.87■□□□□ 0.29
COL9A3-210ENST00000472880 GLO1Q04760 184 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 SCGB2A2Q13296 93 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 MAPRE2Q15555 327 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 LRRC23Q53EV4 343 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-210ENST00000472880 ARMC4Q5T2S8 1044 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 LIPHQ8WWY8 451 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 SIAEQ9HAT2 523 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 DECR2Q9NUI1 292 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 NKIRAS2Q9NYR9 191 aa16.87■□□□□ 0.29
COL9A3-210ENST00000472880 NPIPB13A6NJU9 1138 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 NPIPB4C9JG80 1138 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 STOMP27105 288 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 CDAP32320 146 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 FMODQ06828 376 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 TOP3AQ13472 1001 aaPredicted RBP16.86■□□□□ 0.29
COL9A3-210ENST00000472880 AVPI1Q5T686 147 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 CPEB3Q8NE35 698 aaKnown RBP16.86■□□□□ 0.29
COL9A3-210ENST00000472880 NSMAFQ92636 917 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 HDAC2Q92769 488 aaKnown RBP16.86■□□□□ 0.29
COL9A3-210ENST00000472880 UGT2A1Q9Y4X1 527 aa16.86■□□□□ 0.29
COL9A3-210ENST00000472880 TRAV20A0A0B4J274 112 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 IGHV1-69-2A0A0G2JMI3 117 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 FAM220BPB1ANY3 271 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 CLDN25C9JDP6 229 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 PIP5K1CO60331 668 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 TSPAN19P0C672 248 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 ANPEPP15144 967 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF32P17041 273 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 GCH1P30793 250 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 IFNA8P32881 189 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 LMO4P61968 165 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 MVKQ03426 396 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 KLF10Q13118 480 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 TAF11Q15544 211 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 SGCAQ16586 387 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 CYBRD1Q53TN4 286 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 ALG10Q5BKT4 473 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 UNQ6126/PRO20091Q6UXV3 157 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 C10orf82Q8WW14 230 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 GTF3AQ92664 365 aaKnown RBP16.85■□□□□ 0.29
COL9A3-210ENST00000472880 NABP1Q96AH0 204 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 RAB39BQ96DA2 213 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 TPD52L3Q96J77 140 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF583Q96ND8 569 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 TXNIPQ9H3M7 391 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF665Q9H7R5 613 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 SAP30LQ9HAJ7 183 aa16.85■□□□□ 0.29
COL9A3-210ENST00000472880 EIF3KQ9UBQ5 218 aaKnown RBP16.85■□□□□ 0.29
COL9A3-210ENST00000472880 A0A0A6YYJ9 748 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 PNPP00491 289 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 IGHV3-13P01766 116 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 CRYBB2P43320 205 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 GDI2P50395 445 aaKnown RBP16.84■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF81P51508 661 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 ST3GAL3Q11203 375 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 LAPTM4AQ15012 233 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 TSTQ16762 297 aaKnown RBP16.84■□□□□ 0.29
COL9A3-210ENST00000472880 ZNF718Q3SXZ3 478 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 FAHD2BQ6P2I3 314 aaPredicted RBP16.84■□□□□ 0.29
COL9A3-210ENST00000472880 USP51Q70EK9 711 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 MEX3DQ86XN8 651 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms