RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 WWTR1Q9GZV5 400 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 IFT46Q9NQC8 304 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 MYOTQ9UBF9 498 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 CHRNA9Q9UGM1 479 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 RALYQ9UKM9 306 aaKnown RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 TP53TG5Q9Y2B4 290 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 PRELID3BQ9Y3B1 194 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 C2orf92A0A1B0GVN3 265 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 CD8B2A6NJW9 211 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 FAM25EA8MYX2 175 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 ITGA10O75578 1167 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 CEACAM4O75871 244 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 MPC2O95563 127 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 DHFRP00374 187 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 ACSM4P0C7M7 580 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 CD8BP10966 210 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 RAB3AP20336 220 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 AGFG1P52594 562 aaKnown RBP12.86□□□□□ -0.35
HMGA1-203ENST00000374116 PCSK4Q6UW60 755 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 SLC29A4Q7RTT9 530 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 UBE2J2Q8N2K1 259 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF527Q8NB42 609 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 OR11H4Q8NGC9 324 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 OR5M3Q8NGP4 307 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 SMPDL3BQ92485 455 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 ATF6BQ99941 703 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 NXF5Q9H1B4 397 aaKnown RBP12.86□□□□□ -0.35
HMGA1-203ENST00000374116 CPAMD8Q8IZJ3 1885 aa12.86□□□□□ -0.35
HMGA1-203ENST00000374116 A0A1W2PPL8 197 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 FRG2CA6NGY1 282 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MKRN2OSH3BPM6 223 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 PLPP2O43688 288 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 SLC19A2O60779 497 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 NUP62P37198 522 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MTNR1BP49286 362 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 SOX8P57073 446 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 FLI1Q01543 452 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 PUDPQ08623 228 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 NDUFAF6Q330K2 333 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 H3F3CQ6NXT2 135 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 DPY19L2P2Q6ZN68 376 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 LINC00469Q8N7U9 141 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 CYB561A3Q8NBI2 242 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 OR11H7Q8NGC8 314 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MFRPQ9BY79 579 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 UBQLN4Q9NRR5 601 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 COMMD3Q9UBI1 195 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 LHX6Q9UPM6 363 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF337Q9Y3M9 751 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 NPTNQ9Y639 398 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 SIRT4Q9Y6E7 314 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 SESN1Q9Y6P5 492 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 EML6Q6ZMW3 1958 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MEIKINA0A087WXM9 373 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 SMIM30A4D0T7 59 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 TGM6O95932 706 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 IGF2P01344 180 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MRPL3P09001 348 aaKnown RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 CLUP10909 449 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 RAG2P55895 527 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 CAV3P56539 151 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MLF1P58340 268 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF85Q03923 595 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 LGALSLQ3ZCW2 172 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 ABHD17BQ5VST6 288 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 HLA-DQA1Q5Y7H0 255 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 TIGD4Q8IY51 512 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 OR52E2Q8NGJ4 325 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 ACOT12Q8WYK0 555 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 C3orf49Q96BT1 292 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 LCORQ96JN0 433 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 RASL10BQ96S79 203 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 EMC3Q9P0I2 261 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 LUZP4Q9P127 313 aa12.85□□□□□ -0.35
HMGA1-203ENST00000374116 MRTO4Q9UKD2 239 aaKnown RBP12.85□□□□□ -0.35
HMGA1-203ENST00000374116 ZFYVE26Q68DK2 2539 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 SHISA3A0PJX4 238 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 GNB5O14775 395 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 PNMTP11086 282 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 HPGDP15428 266 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 C4BPBP20851 252 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 INPP1P49441 399 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 GPR176Q14439 515 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 INSL4Q14641 139 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 WBP2NLQ6ICG8 309 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 SPINK14Q6IE38 97 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 JMJD6Q6NYC1 403 aaPredicted RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 IL20RBQ6UXL0 311 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 POMGNT2Q8NAT1 580 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 UXS1Q8NBZ7 420 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 FAM98AQ8NCA5 519 aaKnown RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 PHF21AQ96BD5 680 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 SMAD5Q99717 465 aaKnown RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 DPCDQ9BVM2 203 aaPredicted RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 EXOSC3Q9NQT5 275 aaKnown RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF275Q9NSD4 429 aaPredicted RBP12.84□□□□□ -0.35
HMGA1-203ENST00000374116 RDH8Q9NYR8 311 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 HRH3Q9Y5N1 445 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 IER3IP1Q9Y5U9 82 aa12.84□□□□□ -0.35
HMGA1-203ENST00000374116 HEATR5AQ86XA9 2040 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms