RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SUSD2Q9UGT4 822 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF724A8MTY0 619 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 FXYD1O00168 92 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 DCTN6O00399 190 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 TO15178 435 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM201Q5SNT2 666 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ANKRD53Q8N9V6 530 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ARHGAP9Q9BRR9 750 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 IKZF5Q9H5V7 419 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CACNA1SQ13698 1873 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CD1EP15812 388 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CLDN17P56750 224 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 PHLDA2Q53GA4 152 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM64Q6YI46 380 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CPEB2Q7Z5Q1 589 aaKnown RBP15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CMTM4Q8IZR5 234 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF610Q8N9Z0 462 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 SUMF1Q8NBK3 374 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 OR6K3Q8NGY3 331 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 FN3KRPQ9HA64 309 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 SLC25A19Q9HC21 320 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 NWD2Q9ULI1 1742 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ZFAND5O76080 213 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 APOA2P02652 100 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CPN1P15169 458 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ACHEP22303 614 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 PTGER4P35408 488 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 BIDP55957 195 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 RAB1AP62820 205 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 LIPNQ5VXI9 398 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 MED25Q71SY5 747 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 RTL10Q7L3V2 364 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 TPSD1Q9BZJ3 242 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 OSGIN2Q9Y236 505 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 TRAPPC4Q9Y296 219 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ST8SIA3O43173 380 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 CSNK1G2P78368 415 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 MAT1AQ00266 395 aaKnown RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 BSCL2Q96G97 398 aaPredicted RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 Q96M85 177 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 WWTR1Q9GZV5 400 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 PLK3Q9H4B4 646 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 STRAPQ9Y3F4 350 aaKnown RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 DDX60Q8IY21 1712 aaKnown RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 GPR171O14626 319 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 SLC35E2P0CK97 266 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 GABREP78334 506 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 FAM58AQ8N1B3 248 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 ASB13Q8WXK3 278 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 CITO14578 2027 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 HCRTR1O43613 425 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 KLK8O60259 260 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 MAP2K6P52564 334 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 OR10A3P58181 314 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 DEFB133Q30KQ1 61 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 CLLU1Q5K131 121 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 DCXRQ7Z4W1 244 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF561Q8N587 486 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 STACQ99469 402 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 ATF6BQ99941 703 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 TUSC2O75896 110 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 SLC2A10O95528 541 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 THBS1P07996 1170 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 ZP3P21754 424 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 FOLR3P41439 243 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 UBE2MP61081 183 aaKnown RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM176BQ3YBM2 270 aaPredicted RBP15.93■□□□□ 0.14
SYNPO-201ENST00000307662 Q6ZRG5 221 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 DPPA2Q7Z7J5 298 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 OR2AK2Q8NG84 335 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 LRFN5Q96NI6 719 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 RHNO1Q9BSD3 238 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 CXCL16Q9H2A7 254 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 IFT22Q9H7X7 185 aa15.93■□□□□ 0.14
SYNPO-201ENST00000307662 B3GALT4O96024 378 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 DUSP1P28562 367 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 BCL6P41182 706 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 HOXA1P49639 335 aaPredicted RBP15.92■□□□□ 0.14
SYNPO-201ENST00000307662 OR2B8PP59922 312 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 TLE1Q04724 770 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 TPBGQ13641 420 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 NAXDQ8IW45 347 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 OR1J2Q8NGS2 313 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 NXT1Q9UKK6 140 aaKnown RBP15.92■□□□□ 0.14
SYNPO-201ENST00000307662 TGOLN2O43493 480 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 PTDSS2Q9BVG9 487 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 SLIRPQ9GZT3 109 aaKnown RBP15.92■□□□□ 0.14
SYNPO-201ENST00000307662 AK3Q9UIJ7 227 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 TM4SF4P48230 202 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 FAAP20Q6NZ36 180 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 USP51Q70EK9 711 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 PRSS42Q7Z5A4 293 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 DCBLD2Q96PD2 775 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 TAS2R4Q9NYW5 299 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 GDE1Q9NZC3 331 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 HSPB6O14558 160 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 ADAMTSL4Q6UY14 1074 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 LCORQ96JN0 433 aaPredicted RBP15.92■□□□□ 0.14
SYNPO-201ENST00000307662 MYOTQ9UBF9 498 aa15.92■□□□□ 0.14
SYNPO-201ENST00000307662 C2orf72A6NCS6 295 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms