RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 VMACQ2NL98 169 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 TRPM8Q7Z2W7 1104 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 OR4D11Q8NGI4 311 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 VANGL1Q8TAA9 524 aaPredicted RBP15.8■□□□□ 0.12
CLN3-241ENST00000635861 TAMM41Q96BW9 452 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 SEPHS2Q99611 448 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 SH3GL1Q99961 368 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 TMEM120AQ9BXJ8 343 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 BCL2L14Q9BZR8 327 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 RACGAP1Q9H0H5 632 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 LRMDAQ9H2I8 198 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 ARL2BPQ9Y2Y0 163 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 WNK2Q9Y3S1 2297 aa15.8■□□□□ 0.12
CLN3-241ENST00000635861 IGLV3-9A0A075B6K5 115 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 A0A0A6YYJ9 748 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 A0A0G2JND7 137 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 LYNX1G3V0Z9 82 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 HPXP02790 462 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 QDPRP09417 244 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 LYNX1P0DP58 116 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 SAGP10523 405 aaPredicted RBP15.79■□□□□ 0.12
CLN3-241ENST00000635861 RAD52P43351 418 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 CLRN1P58418 232 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 MELKQ14680 651 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 MOGQ16653 247 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 TBC1D28Q2M2D7 210 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 PCGF3Q3KNV8 242 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 SLC16A14Q7RTX9 510 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 LRP11Q86VZ4 500 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 RBM45Q8IUH3 476 aaKnown RBP15.79■□□□□ 0.12
CLN3-241ENST00000635861 OR10A6Q8NH74 314 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 ZNF519Q8TB69 540 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 SNX33Q8WV41 574 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 RNF121Q9H920 327 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 CDH20Q9HBT6 801 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 SLCO1C1Q9NYB5 712 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 NKIRAS2Q9NYR9 191 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 DUSP13Q9UII6 198 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 BAG5Q9UL15 447 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 TANC2Q9HCD6 1990 aa15.79■□□□□ 0.12
CLN3-241ENST00000635861 IQCMA0A1B0GVH7 501 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 A0A1W2PRG6 482 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 NPIPB13A6NJU9 1138 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 NPIPB4C9JG80 1138 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 ANKRD65E5RJM6 399 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 MT-ND1P03886 318 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 NR2C1P13056 603 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 ZNF250P15622 560 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 RASSF2P50749 326 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 DAP3P51398 398 aaKnown RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 ZNF133P52736 654 aaPredicted RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 ARFIP2P53365 341 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 KLF3P57682 345 aaPredicted RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 PLP2Q04941 152 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 CYLC2Q14093 348 aaPredicted RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 CCNIQ14094 377 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 NKPD1Q17RQ9 610 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 TEX29Q8N6K0 151 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 LRRC17Q8N6Y2 441 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 NOXO1Q8NFA2 376 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 OR4K5Q8NGD3 323 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 CLDND2Q8NHS1 167 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 FGFBP3Q8TAT2 258 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 LIPHQ8WWY8 451 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 RAB3IPQ96QF0 476 aaPredicted RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 SH3GL3Q99963 347 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 PRSS27Q9BQR3 290 aa15.78■□□□□ 0.12
CLN3-241ENST00000635861 MRPL13Q9BYD1 178 aaKnown RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 MEPEQ9NQ76 525 aaPredicted RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 MYEF2Q9P2K5 600 aaKnown RBP15.78■□□□□ 0.12
CLN3-241ENST00000635861 KPNA4O00629 521 aaPredicted RBP15.77■□□□□ 0.12
CLN3-241ENST00000635861 NPPAP01160 153 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 PATE4P0C8F1 98 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 COL8A2P25067 703 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 GZMMP51124 257 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 TEKQ02763 1124 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 SF3A3Q12874 501 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLN3-241ENST00000635861 COQ5Q5HYK3 327 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 C10orf128Q5T292 105 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 SYNPRQ8TBG9 265 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 C11orf40Q8WZ69 217 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 MCHR2Q969V1 340 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 TMEM186Q96B77 213 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 SMURF2Q9HAU4 748 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 ZNF275Q9NSD4 429 aaPredicted RBP15.77■□□□□ 0.12
CLN3-241ENST00000635861 METRNQ9UJH8 293 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 GRIP1Q9Y3R0 1128 aa15.77■□□□□ 0.12
CLN3-241ENST00000635861 HTR3EA5X5Y0 456 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 C17orf100A8MU93 164 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 MCIDASD6RGH6 385 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 BLOC1S5-TXNDC5H3BN57 136 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 RP2O75695 350 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 OR5F1O95221 314 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 IFNA14P01570 189 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 MT-ND5P03915 603 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 MSMBP08118 114 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 TSPAN19P0C672 248 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 THRBP10828 461 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 TCN1P20061 433 aaPredicted RBP15.77■□□□□ 0.11
CLN3-241ENST00000635861 RPL18Q07020 188 aaKnown RBP15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms