RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CCDC182A6NF36 153 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 PNPP00491 289 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 JUNBP17275 347 aaPredicted RBP9.42□□□□□ -0.9
VPS11-208ENST00000621676 POU3F2P20265 443 aaPredicted RBP9.42□□□□□ -0.9
VPS11-208ENST00000621676 SOX6P35712 828 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 SNTB1Q13884 538 aaKnown RBP9.42□□□□□ -0.9
VPS11-208ENST00000621676 P2RY14Q15391 338 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 DCDC5Q6ZRR9 648 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 SLC26A10Q8NG04 563 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 OR10H5Q8NGA6 315 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 ARHGAP9Q9BRR9 750 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 ZNF426Q9BUY5 554 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 SRXN1Q9BYN0 137 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 SLIRPQ9GZT3 109 aaKnown RBP9.42□□□□□ -0.9
VPS11-208ENST00000621676 PLGRKTQ9HBL7 147 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 NOX4Q9NPH5 578 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 TRIM36Q9NQ86 728 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 TEKT2Q9UIF3 430 aa9.42□□□□□ -0.9
VPS11-208ENST00000621676 HEATR1Q9H583 2144 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 MEX3AA1L020 520 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 PRSS37A4D1T9 235 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 BLACEA4D250 179 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 ARRDC5A6NEK1 342 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TRIM64A6NGJ6 449 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 B4GALT1P15291 398 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 LAP3P28838 519 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TNFSF8P32971 234 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 SLC6A8P48029 635 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 RPL27P61353 136 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 SPOCK1Q08629 439 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CSRP2Q16527 193 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 SPANXN2Q5MJ10 180 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 LYPD8Q6UX82 237 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 NR2C2APQ86WQ0 139 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CREB3L1Q96BA8 519 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 INTS14Q96SY0 518 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 NKIRAS2Q9NYR9 191 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CNOT2Q9NZN8 540 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 POU2F3Q9UKI9 436 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 NXT1Q9UKK6 140 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 RASD1Q9Y272 281 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 LIPGQ9Y5X9 500 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 SLC22A1O15245 554 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 ZIC3O60481 467 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 EIF4E2O60573 245 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 KRT8P05787 483 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CARD18P57730 90 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 MLF1P58340 268 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 RAB15P59190 212 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CD300LDQ6UXZ3 194 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 LINC00114Q6XXX2 140 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CHMP1BQ7LBR1 199 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 GID4Q8IVV7 300 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 ZNF440Q8IYI8 595 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 DRAXINQ8NBI3 349 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 ANKRD19PQ9H560 264 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 PROK2Q9HC23 129 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CPNE5Q9HCH3 593 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 KLK13Q9UKR3 277 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 STUB1Q9UNE7 303 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 GSTK1Q9Y2Q3 226 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 P2RY10O00398 339 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 GP1BAP07359 652 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 NTF4P34130 210 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 EMP3P54852 163 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 EFNB1P98172 346 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TRA2AQ13595 282 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS11-208ENST00000621676 EXT1Q16394 746 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 NTRK2Q16620 822 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TBC1D25Q3MII6 688 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 YOD1Q5VVQ6 348 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 RSBN1Q5VWQ0 802 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 PEAR1Q5VY43 1037 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 TMEM91Q6ZNR0 172 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 VASH1Q7L8A9 365 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 BHLHE23Q8NDY6 225 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 OR2T4Q8NH00 348 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 ABHD4Q8TB40 342 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CRELD1Q96HD1 420 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 TIMP4Q99727 224 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 CHRNA10Q9GZZ6 450 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 ELL3Q9HB65 397 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 CGGBP1Q9UFW8 167 aaPredicted RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 HIF3AQ9Y2N7 669 aa9.41□□□□□ -0.9
VPS11-208ENST00000621676 LSM2Q9Y333 95 aaKnown RBP9.41□□□□□ -0.9
VPS11-208ENST00000621676 A0A1W2PQ72 361 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 ANKUB1A6NFN9 424 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 CLDN25C9JDP6 229 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 SNPHO15079 494 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 GUCA1AP43080 201 aaPredicted RBP9.4□□□□□ -0.9
VPS11-208ENST00000621676 GBX2P52951 348 aaPredicted RBP9.4□□□□□ -0.9
VPS11-208ENST00000621676 TRIM16LQ309B1 348 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 PHYHD1Q5SRE7 291 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 HBMQ6B0K9 141 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 C3orf33Q6P1S2 294 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 USP43Q70EL4 1123 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 FAM220AQ7Z4H9 259 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 SLC22A16Q86VW1 577 aa9.4□□□□□ -0.9
VPS11-208ENST00000621676 CMIPQ8IY22 773 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms