RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SHEQ5VZ18 495 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 KRTAP1-3Q8IUG1 177 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 CPOQ8IVL8 374 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 C8orf59Q8N0T1 100 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-208ENST00000597172 DEPDC4Q8N2C3 294 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 CIARTQ8N365 385 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-208ENST00000597172 RPRMLQ8N4K4 120 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 MARVELD2Q8N4S9 558 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 C9orf106Q8NAJ2 232 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 CYB561A3Q8NBI2 242 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 SDR9C7Q8NEX9 313 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 OR8J1Q8NGP2 316 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 OR6X1Q8NH79 312 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 TMEM163Q8TC26 289 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 ZNRF4Q8WWF5 429 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 WNT2BQ93097 391 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 SLC38A2Q96QD8 506 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 KCNK17Q96T54 332 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 NMNAT3Q96T66 252 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 APOL4Q9BPW4 351 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 PRRG4Q9BZD6 226 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 NDEL1Q9GZM8 345 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 CLEC4MQ9H2X3 399 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-208ENST00000597172 MED20Q9H944 212 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 HINT3Q9NQE9 182 aaKnown RBP8.34□□□□□ -1.07
TRIM28-208ENST00000597172 RASSF1Q9NS23 344 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 KLHL9Q9P2J3 617 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 KLHL21Q9UJP4 597 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 CLEC4AQ9UMR7 237 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 HSPE1-MOB4S4R3N1 261 aa8.34□□□□□ -1.07
TRIM28-208ENST00000597172 KIAA1549Q9HCM3 1950 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 WNK1Q9H4A3 2382 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 PRSS37A4D1T9 235 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 MBD3L4A6NDZ8 208 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 MBD3L3A6NE82 208 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 A6NIZ1 184 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 MBD3L5A6NJ08 208 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 FAM183AA6NL82 134 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 H7C1C5 153 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 DCTN6O00399 190 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SMAD7O15105 426 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 ENTPD6O75354 484 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TOXO94900 526 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 RAF1P04049 648 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 PGA4P0DJD7 388 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 PGA3P0DJD8 388 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 ACVR2AP27037 513 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SELENOPP49908 381 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 DAP3P51398 398 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 RAP1BP61224 184 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 LCN6P62502 163 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 RAP1AP62834 184 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 IL5RAQ01344 420 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TFF3Q07654 80 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 MED21Q13503 144 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 CRMP1Q14194 572 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 RNPS1Q15287 305 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SF3B4Q15427 424 aaKnown RBP eCLIP8.33□□□□□ -1.087e-14■■■■■ 46.4
TRIM28-208ENST00000597172 GUSBP1Q15486 140 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 OCLNQ16625 522 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SMN1Q16637 294 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 HIST3H3Q16695 136 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 PHYHD1Q5SRE7 291 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 C6orf141Q5SZD1 244 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 C1orf185Q5T7R7 199 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 GTF2IRD2BQ6EKJ0 949 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 LEG1Q6P5S2 330 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 LRFN4Q6PJG9 635 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 C3P1Q6ZMU1 363 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 NUFIP2Q7Z417 695 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 GTF2IRD2Q86UP8 949 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TMEM123Q8N131 208 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SYT14Q8NB59 555 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SETD9Q8NE22 299 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 BBS1Q8NFJ9 593 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 MBD3L2Q8NHZ7 208 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 CNIH3Q8TBE1 160 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TMEM45BQ96B21 275 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 NMD3Q96D46 503 aaKnown RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 SLC25A44Q96H78 314 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TSSK2Q96PF2 358 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 OR2M2Q96R28 347 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 TEX12Q9BXU0 123 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 NMNAT2Q9BZQ4 307 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 FN3KQ9H479 309 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 Q9H521 79 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 IMPAD1Q9NX62 359 aa8.33□□□□□ -1.08
TRIM28-208ENST00000597172 VSX1Q9NZR4 365 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-208ENST00000597172 IGKV1D-43A0A0B4J1Z2 117 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SLC22A23A1A5C7 686 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 NKX2-6A6NCS4 301 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 FIGNL2A6NMB9 653 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF726A6NNF4 738 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 RIIAD1A6NNX1 92 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 E9PLN8 166 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 GPR171O14626 319 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 PRRG2O14669 202 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 MPZL2O60487 215 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SS18L1O75177 396 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ATE1O95260 518 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms